Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.0e-92 342.4 171 100.0
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.0e-92 342.4 171 100.0
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.1e-34 150.6 130 63.1
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 1.1e-34 150.6 130 63.1
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.6e-33 146.7 113 68.1
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 3.0e-32 142.5 113 67.3
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.5e-31 139.4 161 53.4
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 7.3e-31 137.9 159 52.8
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 2.0e-28 129.8 89 74.2
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 4.5e-28 128.6 126 57.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 4.9e-27 125.2 132 53.8
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 6.4e-27 124.8 137 53.3
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 8.4e-27 124.4 114 63.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.9e-26 123.2 108 61.1
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 4.2e-26 122.1 112 58.9
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 1.2e-25 120.6 112 58.0
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.2e-25 120.6 112 58.0
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 2.7e-25 119.4 97 63.9
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.9e-25 117.9 92 69.6
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 6.7e-24 114.8 130 50.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 8.7e-24 114.4 116 57.8
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.1e-23 114.0 129 51.2
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.1e-23 114.0 130 50.0
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.5e-23 113.6 112 57.1
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.5e-23 112.8 128 50.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.5e-23 112.8 128 50.0
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 3.3e-23 112.5 113 58.4
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 3.3e-23 112.5 115 55.7
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 4.3e-23 112.1 116 55.2
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.3e-23 112.1 128 50.0
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 4.3e-23 112.1 112 53.6
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 4.3e-23 112.1 131 48.9
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 4.3e-23 112.1 113 56.6
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 7.4e-23 111.3 112 57.1
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.3e-22 110.5 131 49.6
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 2.1e-22 109.8 116 52.6
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.1e-22 109.8 130 51.5
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 4.8e-22 108.6 115 59.1
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 4.8e-22 108.6 116 52.6
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 4.8e-22 108.6 140 45.7
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 6.2e-22 108.2 116 53.4
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 6.2e-22 108.2 118 56.8
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 6.2e-22 108.2 72 75.0
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 6.2e-22 108.2 129 51.9
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 6.2e-22 108.2 113 52.2
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.1e-22 107.8 114 57.9
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.1e-21 107.5 115 54.8
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 1.1e-21 107.5 116 53.4
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.4e-21 107.1 137 48.9
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.4e-21 106.3 67 77.6
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 3.1e-21 105.9 92 59.8
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.1e-21 105.9 118 56.8
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 4.0e-21 105.5 115 52.2
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 5.3e-21 105.1 120 55.8
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 6.9e-21 104.8 108 52.8
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 9.0e-21 104.4 112 52.7
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 9.0e-21 104.4 117 51.3
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 9.0e-21 104.4 115 56.5
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.0e-20 103.2 107 55.1
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 2.6e-20 102.8 117 50.4
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.6e-20 102.8 128 46.9
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.6e-20 102.8 92 59.8
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 3.4e-20 102.4 91 63.7
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 4.5e-20 102.1 115 51.3
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 4.5e-20 102.1 115 51.3
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 4.5e-20 102.1 113 57.5
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 5.8e-20 101.7 112 50.9
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 5.8e-20 101.7 129 45.0
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 5.8e-20 101.7 117 49.6
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 5.8e-20 101.7 113 57.5
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 5.8e-20 101.7 112 51.8
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.6e-20 101.3 112 51.8
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 7.6e-20 101.3 108 56.5
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.6e-20 101.3 109 54.1
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.0e-19 100.9 112 51.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 1.0e-19 100.9 143 46.2
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 3.8e-19 99.0 114 50.0
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.8e-19 99.0 114 50.0
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 6.5e-19 98.2 112 49.1
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.4e-18 97.1 107 54.2
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.4e-18 97.1 113 55.8
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.9e-18 96.7 114 51.8
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.9e-18 96.7 91 62.6
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 3.2e-18 95.9 131 45.8
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 3.2e-18 95.9 112 50.9
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 4.2e-18 95.5 107 50.5
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 4.2e-18 95.5 112 50.9
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.5e-18 95.1 107 52.3
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 9.3e-18 94.4 114 50.9
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 9.3e-18 94.4 96 58.3
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 9.3e-18 94.4 91 60.4
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.2e-17 94.0 132 43.2
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.6e-17 93.6 112 51.8
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.7e-17 92.8 107 52.3
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.7e-17 92.8 138 44.9
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 3.5e-17 92.4 112 50.0
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 3.5e-17 92.4 113 52.2
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 3.5e-17 92.4 114 55.3
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 7.9e-17 91.3 113 54.9
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.0e-16 90.9 112 48.2
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 1.0e-16 90.9 132 44.7
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 1.3e-16 90.5 105 48.6
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.3e-16 90.5 90 57.8
vmacro01352 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 3.0e-16 89.4 120 49.2
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 3.9e-16 89.0 112 49.1
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 5.1e-16 88.6 115 51.3
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 5.1e-16 88.6 128 46.1
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 8.7e-16 87.8 111 47.7
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 8.7e-16 87.8 99 52.5
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 8.7e-16 87.8 113 49.6
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.1e-15 87.4 111 49.5
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.1e-15 87.4 111 49.5
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 5.7e-15 85.1 113 48.7
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 3.7e-14 82.4 115 46.1
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 4.8e-14 82.0 90 53.3
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 8.2e-14 81.3 109 45.0
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 8.2e-14 81.3 106 44.3
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 8.2e-14 81.3 114 47.4
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.8e-13 80.1 114 46.5
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 2.4e-13 79.7 108 53.7
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 3.1e-13 79.3 52 67.3
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.3e-13 78.6 90 52.2
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.2e-12 77.4 160 37.5
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 2.6e-12 76.3 128 40.6
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 7.6e-12 74.7 99 46.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.0e-11 74.3 112 43.8
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.3e-11 73.9 94 48.9
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 1.3e-11 73.9 98 46.9
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.9e-11 72.8 94 46.8
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.9e-11 72.8 106 50.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.8e-11 72.4 79 57.0
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.4e-10 70.5 37 86.5
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-10 70.1 34 91.2
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 3.2e-10 69.3 45 68.9
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 4.2e-10 68.9 97 46.4
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 7.1e-10 68.2 156 37.2
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 7.1e-10 68.2 98 43.9
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.2e-09 67.4 50 64.0
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.7e-09 66.2 35 82.9
Nitab4.5_0001726g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 8.7e-08 61.2 75 50.7
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.5e-07 60.5 124 37.1
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.9e-07 60.1 35 77.1
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 7.4e-07 58.2 29 86.2
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 4.8e-06 55.5 45 57.8
SalBow1G4992 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.2e-06 54.7 85 44.7


User provided reference genes

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