Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.0e-39 165.2 79 100.0
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.1e-35 150.6 72 97.2
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 5.1e-35 150.6 72 97.2
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 1.9e-34 148.7 79 88.6
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 2.5e-34 148.3 73 94.5
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 2.5e-34 148.3 73 94.5
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 2.5e-34 148.3 73 94.5
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 2.5e-34 148.3 73 94.5
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 2.5e-34 148.3 73 94.5
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 4.3e-34 147.5 71 94.4
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 4.3e-34 147.5 75 90.7
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 4.3e-34 147.5 73 93.2
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 5.6e-34 147.1 75 88.0
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 5.6e-34 147.1 75 88.0
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 5.6e-34 147.1 75 88.0
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 9.5e-34 146.4 75 88.0
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 9.5e-34 146.4 75 90.7
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 2.1e-33 145.2 75 89.3
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 2.1e-33 145.2 73 93.2
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 2.8e-33 144.8 73 93.2
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 2.8e-33 144.8 75 88.0
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 2.8e-33 144.8 76 88.2
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 3.6e-33 144.4 74 87.8
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.6e-33 144.4 75 86.7
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 4.7e-33 144.1 75 88.0
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 4.7e-33 144.1 75 85.3
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 6.2e-33 143.7 75 86.7
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 6.2e-33 143.7 75 86.7
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 6.2e-33 143.7 75 86.7
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 6.2e-33 143.7 75 88.0
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 8.1e-33 143.3 75 86.7
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 8.1e-33 143.3 75 86.7
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 8.1e-33 143.3 75 86.7
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 1.1e-32 142.9 75 86.7
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.1e-32 142.9 73 89.0
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.1e-32 142.9 75 86.7
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 1.1e-32 142.9 75 86.7
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.4e-32 142.5 75 86.7
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 1.8e-32 142.1 73 87.7
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 1.8e-32 142.1 75 85.3
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.8e-32 142.1 73 89.0
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 1.8e-32 142.1 75 86.7
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.8e-32 142.1 73 89.0
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.4e-32 141.7 75 85.3
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.4e-32 141.7 75 85.3
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 2.4e-32 141.7 75 85.3
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 2.4e-32 141.7 75 85.3
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.4e-32 141.7 75 85.3
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.4e-32 141.7 75 85.3
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 2.4e-32 141.7 75 85.3
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 3.1e-32 141.4 75 85.3
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.1e-32 141.4 75 84.0
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.1e-32 141.4 75 84.0
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 3.1e-32 141.4 75 84.0
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 3.1e-32 141.4 75 85.3
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 4.0e-32 141.0 71 88.7
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 4.0e-32 141.0 73 89.0
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 85.3
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 5.2e-32 140.6 73 86.3
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 5.2e-32 140.6 73 86.3
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 85.3
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 85.3
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 85.3
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 5.2e-32 140.6 75 84.0
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 6.8e-32 140.2 75 84.0
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 6.8e-32 140.2 75 84.0
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 6.8e-32 140.2 75 85.3
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 6.8e-32 140.2 73 86.3
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 6.8e-32 140.2 75 85.3
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 8.9e-32 139.8 73 86.3
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.2e-31 139.4 73 87.7
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 1.2e-31 139.4 75 84.0
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 1.2e-31 139.4 75 84.0
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.2e-31 139.4 75 82.7
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 1.5e-31 139.0 75 84.0
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 1.5e-31 139.0 75 82.7
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 2.0e-31 138.7 76 81.6
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 2.0e-31 138.7 73 86.3
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.0e-31 138.7 73 84.9
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 2.6e-31 138.3 75 82.7
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 2.6e-31 138.3 73 84.9
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 82.7
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 84.0
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 82.7
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 82.7
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 82.7
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 82.7
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 82.7
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 3.4e-31 137.9 75 82.7
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 3.4e-31 137.9 69 91.3
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 4.4e-31 137.5 71 85.9
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 4.4e-31 137.5 72 87.5
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 4.4e-31 137.5 73 87.7
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 5.8e-31 137.1 73 84.9
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 5.8e-31 137.1 75 81.3
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 5.8e-31 137.1 75 81.3
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 1.3e-30 136.0 75 82.7
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.3e-30 136.0 73 82.2
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 1.7e-30 135.6 75 81.3
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 1.7e-30 135.6 75 81.3
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 2.2e-30 135.2 75 81.3
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 2.2e-30 135.2 75 81.3
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 2.9e-30 134.8 75 80.0
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 3.8e-30 134.4 75 80.0
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 3.8e-30 134.4 75 81.3
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 3.8e-30 134.4 75 81.3
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 4.9e-30 134.0 75 80.0
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 4.9e-30 134.0 75 81.3
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 8.4e-30 133.3 73 82.2
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 8.4e-30 133.3 75 80.0
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 1.1e-29 132.9 74 78.4
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 1.9e-29 132.1 75 78.7
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 1.9e-29 132.1 75 78.7
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 9.2e-29 129.8 75 77.3
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 3.5e-28 127.9 66 90.9
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 6.0e-28 127.1 71 78.9
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 2.3e-27 125.2 75 80.0
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 3.0e-27 124.8 64 90.6
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 1.2e-23 112.8 68 79.4
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 1.7e-22 109.0 74 74.3
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.9e-21 105.5 74 64.9
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 2.4e-21 105.1 74 64.9
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 3.2e-21 104.8 75 68.0
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 5.4e-21 104.0 48 91.7
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 3.5e-20 101.3 55 76.4
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 3.5e-20 101.3 71 64.8
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 5.1e-19 97.4 73 65.8
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 1.9e-18 95.5 45 88.9
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 1.6e-17 92.4 67 64.2
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 2.6e-15 85.1 51 78.4
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 2.3e-11 72.0 48 72.9
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 4.3e-10 67.8 69 49.3
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 5.6e-10 67.4 68 51.5
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.0e-07 58.9 30 80.0
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.3e-06 56.2 58 46.6


User provided reference genes

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