Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.3e-84 315.5 151 100.0
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 2.3e-84 315.5 151 100.0
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 2.5e-75 285.4 151 92.1
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 7.3e-75 283.9 151 90.1
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 7.3e-75 283.9 151 90.1
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 4.0e-73 278.1 151 88.7
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 5.2e-73 277.7 150 88.7
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 6.9e-73 277.3 154 88.3
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 9.9e-72 273.5 151 86.8
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.3e-71 273.1 151 88.1
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 1.3e-71 273.1 151 86.8
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 1.7e-71 272.7 151 86.8
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 2.2e-71 272.3 151 88.1
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 4.9e-71 271.2 148 88.5
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 8.4e-71 270.4 175 77.7
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.1e-70 270.0 151 85.4
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.9e-70 269.2 151 88.1
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.9e-70 269.2 151 88.1
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 3.2e-70 268.5 151 87.4
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 3.2e-70 268.5 151 84.8
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 4.2e-70 268.1 151 84.8
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 4.2e-70 268.1 151 84.8
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 5.4e-70 267.7 151 84.8
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 5.4e-70 267.7 151 87.4
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 5.4e-70 267.7 151 87.4
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 7.1e-70 267.3 151 84.8
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.6e-69 266.2 151 84.8
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.6e-69 266.2 151 87.4
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 2.7e-69 265.4 151 84.1
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 3.5e-69 265.0 151 84.1
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 4.6e-69 264.6 151 82.8
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 4.6e-69 264.6 151 83.4
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 4.6e-69 264.6 151 83.4
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 4.6e-69 264.6 151 83.4
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 4.6e-69 264.6 151 84.1
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 4.6e-69 264.6 151 82.8
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 1.0e-68 263.5 151 84.1
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 1.0e-68 263.5 151 84.1
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 1.3e-68 263.1 151 82.8
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.3e-68 263.1 151 84.1
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 1.7e-68 262.7 151 82.1
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 1.7e-68 262.7 151 82.8
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.7e-68 262.7 151 84.1
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.3e-68 262.3 151 82.8
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 2.3e-68 262.3 151 82.8
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 3.0e-68 261.9 151 82.8
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 3.0e-68 261.9 151 82.8
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 3.0e-68 261.9 151 84.1
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 3.0e-68 261.9 151 82.8
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 3.9e-68 261.5 151 82.8
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.9e-68 261.5 151 82.8
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.9e-68 261.5 149 84.6
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 3.9e-68 261.5 151 82.8
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 5.1e-68 261.2 151 82.8
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 5.1e-68 261.2 151 82.1
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 5.1e-68 261.2 151 81.5
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 6.6e-68 260.8 151 82.1
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 6.6e-68 260.8 151 82.1
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 6.6e-68 260.8 151 82.1
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 6.6e-68 260.8 151 82.1
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 6.6e-68 260.8 151 82.8
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 6.6e-68 260.8 151 82.8
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 6.6e-68 260.8 151 82.8
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 8.7e-68 260.4 151 81.5
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 8.7e-68 260.4 151 82.8
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 1.1e-67 260.0 151 82.1
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 1.1e-67 260.0 151 82.1
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 1.1e-67 260.0 151 82.1
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.1e-67 260.0 151 81.5
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.5e-67 259.6 151 81.5
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 1.5e-67 259.6 151 82.1
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 1.5e-67 259.6 151 82.1
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 1.9e-67 259.2 151 82.8
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 1.9e-67 259.2 151 82.1
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 2.5e-67 258.8 151 81.5
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 4.3e-67 258.1 151 82.1
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 4.3e-67 258.1 151 80.8
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 4.3e-67 258.1 151 82.1
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 5.6e-67 257.7 151 80.1
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 5.6e-67 257.7 151 81.5
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 7.3e-67 257.3 151 82.1
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 7.3e-67 257.3 149 81.2
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 9.6e-67 256.9 151 81.5
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.3e-66 256.5 151 80.1
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 80.8
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 81.5
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.6e-66 256.1 151 80.1
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 2.1e-66 255.8 151 80.1
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 3.6e-66 255.0 151 80.8
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 3.6e-66 255.0 151 80.8
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 3.6e-66 255.0 151 80.8
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 4.8e-66 254.6 151 80.1
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 4.8e-66 254.6 151 80.8
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 4.8e-66 254.6 142 88.0
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 4.8e-66 254.6 151 80.8
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 4.8e-66 254.6 151 80.1
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 6.2e-66 254.2 151 80.8
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 6.2e-66 254.2 151 81.5
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.4e-65 253.1 149 81.9
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.8e-65 252.7 151 80.1
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.4e-65 252.3 151 79.5
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 2.4e-65 252.3 151 82.8
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 2.4e-65 252.3 151 80.1
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 2.4e-65 252.3 151 80.8
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 9.0e-65 250.4 151 78.8
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 1.2e-64 250.0 151 78.8
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 2.0e-64 249.2 151 78.8
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 9.9e-64 246.9 142 84.5
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 5.4e-62 241.1 150 74.7
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 5.1e-60 234.6 146 77.4
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 2.1e-58 229.2 151 70.2
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 6.9e-57 224.2 184 64.1
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 1.7e-55 219.5 151 73.5
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 2.2e-55 219.2 260 47.7
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 2.1e-53 212.6 151 68.2
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 3.9e-52 208.4 308 42.2
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 5.3e-49 198.0 146 69.2
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 1.2e-48 196.8 151 63.6
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 8.4e-47 190.7 148 61.5
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.9e-46 189.5 148 62.2
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 7.1e-46 187.6 149 61.1
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 1.6e-45 186.4 124 76.6
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 6.0e-45 184.5 149 65.8
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 8.7e-44 180.6 145 60.7
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.9e-35 152.9 91 80.2
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 4.3e-35 151.8 89 82.0
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.3e-34 150.2 72 97.2
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 2.8e-34 149.1 100 72.0
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 3.7e-34 148.7 71 97.2
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 8.2e-34 147.5 71 94.4
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 1.5e-32 143.3 149 49.0
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 7.7e-32 141.0 71 88.7
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 5.0e-31 138.3 71 87.3
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 5.0e-31 138.3 71 87.3
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 2.8e-26 122.5 70 77.1
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.2e-24 117.1 140 43.6
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 2.0e-24 116.3 63 84.1
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 2.0e-24 116.3 150 42.7
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 1.3e-23 113.6 64 81.2
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 2.9e-23 112.5 84 67.9
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 2.5e-22 109.4 156 43.6
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 5.5e-22 108.2 72 75.0
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 1.3e-15 87.0 90 52.2
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 9.4e-14 80.9 45 84.4
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 1.0e-12 77.4 57 66.7
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 1.1e-09 67.4 106 35.8
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.8e-07 58.9 30 80.0
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 7.2e-06 54.7 102 40.2


User provided reference genes

Program Settings