Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.6e-245 852.4 473 100.0
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.2e-194 682.6 520 78.5
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 6.5e-186 654.4 523 69.6
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.3e-173 611.3 488 73.4
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.7e-168 595.9 488 72.5
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.9e-167 592.0 501 71.5
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 8.0e-160 567.8 485 68.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.4e-148 529.6 487 63.0
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 3.2e-145 519.2 484 62.2
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.2e-145 518.8 492 61.6
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 7.2e-145 518.1 504 61.7
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.1e-144 516.5 486 60.7
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.7e-144 516.2 489 60.7
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.0e-142 510.0 486 63.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.7e-141 506.9 487 57.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 8.3e-141 504.6 445 67.4
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 8.3e-141 504.6 487 60.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.4e-140 503.8 487 62.8
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.8e-140 503.4 480 61.0
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.4e-140 503.1 484 60.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 4.1e-140 502.3 491 60.5
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-139 500.7 484 57.2
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.6e-139 500.4 481 62.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.0e-139 500.0 490 60.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 3.5e-139 499.2 487 60.6
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 5.9e-139 498.4 485 60.2
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 7.7e-139 498.0 484 59.7
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.3e-138 497.3 481 62.6
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.8e-138 495.7 486 57.2
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.8e-138 495.7 486 57.2
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.5e-137 493.0 485 57.1
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 9.5e-137 491.1 508 54.9
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.2e-136 490.7 510 56.9
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.6e-136 490.3 486 57.0
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 3.6e-136 489.2 485 56.3
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 4.7e-136 488.8 486 56.8
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 4.7e-136 488.8 481 59.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 6.1e-136 488.4 486 56.2
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 4.0e-135 485.7 435 62.8
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.0e-135 485.7 484 57.2
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 2.6e-134 483.0 482 58.3
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.4e-134 482.6 509 55.6
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 4.4e-134 482.3 484 61.0
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 4.4e-134 482.3 484 58.3
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.7e-134 481.9 500 59.0
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.7e-133 480.3 492 55.3
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.2e-133 479.9 481 60.3
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.8e-133 479.6 492 58.3
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.7e-133 479.2 484 57.2
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.3e-133 478.4 481 57.6
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 6.3e-133 478.4 484 57.0
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 8.3e-133 478.0 490 54.3
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 8.3e-133 478.0 487 58.5
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.1e-132 477.6 487 54.4
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.4e-132 476.5 481 57.0
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.1e-132 476.1 484 56.2
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.0e-132 474.9 327 79.8
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.2e-131 474.2 498 54.8
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.2e-131 474.2 480 55.2
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 7.8e-131 471.5 491 57.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.9e-129 466.8 482 54.4
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.3e-129 465.7 495 57.2
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 7.3e-129 464.9 482 53.9
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.6e-128 463.8 495 56.2
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.3e-127 459.9 482 54.1
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 4.0e-127 459.1 487 54.2
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 5.2e-127 458.8 498 59.0
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 8.9e-127 458.0 494 57.3
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.2e-126 457.6 466 61.4
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-126 457.2 388 64.7
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.0e-126 456.8 483 53.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 3.4e-126 456.1 486 58.4
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.4e-126 456.1 484 53.5
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 5.8e-126 455.3 489 53.8
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 4.9e-125 452.2 487 53.0
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 9.2e-124 448.0 480 52.9
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 1.3e-122 444.1 525 51.6
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.3e-122 444.1 494 57.1
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.6e-120 437.2 484 55.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 6.2e-120 435.3 481 50.3
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.8e-119 433.7 488 54.1
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.4e-116 422.2 494 52.8
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 7.8e-115 418.3 508 49.0
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.0e-114 415.6 506 48.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 8.6e-114 414.8 499 49.7
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.8e-112 409.8 480 51.0
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.2e-110 404.4 486 50.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.6e-110 403.3 493 50.1
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.4e-108 397.5 482 47.7
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.6e-107 394.0 439 56.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.1e-107 393.7 485 45.8
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.5e-107 392.9 483 49.7
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.5e-107 392.9 483 49.7
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.5e-107 392.9 485 48.5
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.0e-106 391.3 483 49.9
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 5.1e-106 389.0 495 45.1
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 8.6e-106 388.3 483 51.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 8.6e-106 388.3 483 51.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 4.0e-103 379.4 488 45.7
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.2e-102 377.9 403 54.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.2e-102 377.9 427 51.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.8e-101 372.9 327 64.5
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.0e-90 338.2 482 43.6
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.3e-88 331.3 461 42.7
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.3e-88 331.3 482 42.5
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.2e-84 316.6 293 65.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 5.4e-84 315.8 200 78.0
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 4.6e-83 312.8 403 46.9
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 3.5e-75 286.6 372 44.6
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-71 274.6 145 97.9
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.5e-70 271.2 308 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.1e-67 260.8 507 35.7
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 6.7e-66 255.8 490 40.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 8.7e-66 255.4 461 42.1
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.9e-65 254.2 266 51.5
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 9.7e-65 251.9 493 39.4
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.0e-61 241.9 269 56.9
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 1.3e-45 188.3 613 30.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.7e-45 188.0 217 48.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.2e-43 181.8 124 70.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.4e-39 167.5 108 79.6
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 7.5e-33 146.0 175 46.3
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 7.2e-28 129.4 278 37.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 5.2e-26 123.2 456 30.5
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 6.8e-26 122.9 280 36.4
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-25 120.9 76 76.3
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 3.4e-25 120.6 96 66.7
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 4.4e-25 120.2 287 35.5
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.3e-24 118.6 73 69.9
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.2e-24 117.9 58 98.3
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.1e-23 114.0 378 27.5
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 4.1e-23 113.6 105 55.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 2.4e-15 87.8 188 30.9
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.7e-13 81.6 55 69.1
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.3e-13 81.3 73 57.5
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.1e-12 79.0 211 38.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 2.8e-11 74.3 203 39.4
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 6.8e-10 69.7 206 37.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 2.0e-09 68.2 174 27.6
Hma1.2p1_0468F.1_g158750 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.9e-08 64.3 92 69.6
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.1e-07 62.4 47 63.8
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 4.6e-06 57.0 117 32.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 6.0e-06 56.6 49 53.1
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.8e-06 56.2 41 70.7
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.8e-06 56.2 41 70.7


User provided reference genes

Program Settings