Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 3.8e-65 252.7 320 100.0
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.2e-55 221.1 104 100.0
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.7e-52 210.7 104 96.2
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 2.6e-45 186.8 93 92.5
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 2.6e-45 186.8 93 92.5
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.5e-40 170.2 90 84.4
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 5.6e-40 169.1 90 85.6
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.6e-39 167.5 90 83.3
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 4.7e-39 166.0 96 75.0
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 4.7e-39 166.0 90 80.0
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 6.2e-39 165.6 89 84.3
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 8.0e-39 165.2 90 81.1
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 8.0e-39 165.2 104 73.1
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 1.1e-38 164.9 90 80.0
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 1.4e-38 164.5 90 78.9
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 2.3e-38 163.7 90 80.0
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 2.3e-38 163.7 96 79.2
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.3e-38 163.7 90 80.0
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.1e-38 163.3 90 80.0
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 4.0e-38 162.9 90 76.7
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 5.2e-38 162.5 97 75.3
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 6.8e-38 162.2 91 74.7
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 6.8e-38 162.2 90 78.9
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 6.8e-38 162.2 90 81.1
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 1.2e-37 161.4 97 73.2
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 1.2e-37 161.4 90 74.4
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.2e-37 161.4 88 80.7
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.2e-37 161.4 90 80.0
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 1.2e-37 161.4 90 75.6
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 1.2e-37 161.4 90 75.6
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 1.5e-37 161.0 90 77.8
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 1.5e-37 161.0 90 77.8
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 1.5e-37 161.0 90 77.8
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 1.5e-37 161.0 90 78.9
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 2.0e-37 160.6 90 78.9
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 2.6e-37 160.2 90 76.7
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 2.6e-37 160.2 90 76.7
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 3.4e-37 159.8 90 77.8
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 3.4e-37 159.8 89 77.5
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 3.4e-37 159.8 89 77.5
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.4e-37 159.8 91 73.6
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 4.4e-37 159.5 90 82.2
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 4.4e-37 159.5 90 76.7
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 7.5e-37 158.7 90 75.6
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 7.5e-37 158.7 90 76.7
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 7.5e-37 158.7 91 78.0
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 7.5e-37 158.7 94 74.5
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 9.8e-37 158.3 90 77.8
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 9.8e-37 158.3 89 77.5
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 9.8e-37 158.3 90 80.0
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 1.3e-36 157.9 90 80.0
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 2.2e-36 157.1 94 75.5
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 2.2e-36 157.1 90 76.7
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 2.9e-36 156.8 90 74.4
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 2.9e-36 156.8 90 77.8
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 3.7e-36 156.4 90 77.8
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.7e-36 156.4 90 76.7
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 3.7e-36 156.4 90 76.7
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 4.9e-36 156.0 90 75.6
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 4.9e-36 156.0 90 73.3
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 8.3e-36 155.2 89 77.5
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 8.3e-36 155.2 90 76.7
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 8.3e-36 155.2 90 73.3
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 1.1e-35 154.8 95 74.7
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 1.4e-35 154.5 92 72.8
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 1.9e-35 154.1 89 76.4
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 1.9e-35 154.1 88 76.1
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 1.9e-35 154.1 90 72.2
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 2.4e-35 153.7 90 76.7
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 2.4e-35 153.7 88 75.0
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 5.4e-35 152.5 90 76.7
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 7.0e-35 152.1 93 73.1
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 7.0e-35 152.1 94 74.5
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 7.0e-35 152.1 88 75.0
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 9.2e-35 151.8 88 75.0
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.2e-34 151.4 101 71.3
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 1.2e-34 151.4 96 74.0
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 1.6e-34 151.0 96 71.9
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 1.6e-34 151.0 91 72.5
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.6e-34 151.0 93 74.2
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.0e-34 150.6 90 71.1
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 2.0e-34 150.6 90 71.1
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 2.7e-34 150.2 90 73.3
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 2.7e-34 150.2 96 69.8
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 2.7e-34 150.2 99 70.7
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 2.7e-34 150.2 85 75.3
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 2.7e-34 150.2 90 76.7
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 2.7e-34 150.2 95 75.8
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 4.6e-34 149.4 88 73.9
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 4.6e-34 149.4 89 73.0
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 6.0e-34 149.1 90 76.7
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 6.0e-34 149.1 90 75.6
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 6.0e-34 149.1 90 76.7
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 7.8e-34 148.7 90 75.6
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 7.8e-34 148.7 88 72.7
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 7.8e-34 148.7 88 72.7
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 1.3e-33 147.9 90 72.2
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 1.7e-33 147.5 91 72.5
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 2.3e-33 147.1 90 72.2
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.0e-33 146.7 90 74.4
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 3.9e-33 146.4 107 62.6
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 6.6e-33 145.6 94 70.2
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 6.6e-33 145.6 97 70.1
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 6.6e-33 145.6 92 69.6
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 8.6e-33 145.2 90 73.3
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 8.6e-33 145.2 90 74.4
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 1.5e-32 144.4 96 70.8
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.5e-32 144.4 90 73.3
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 2.5e-32 143.7 91 72.5
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 2.5e-32 143.7 87 71.3
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.6e-32 142.5 89 74.2
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 5.6e-32 142.5 97 64.9
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 1.2e-31 141.4 95 65.3
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 1.6e-31 141.0 91 67.0
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 2.8e-31 140.2 93 68.8
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 2.8e-31 140.2 74 78.4
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 2.8e-31 140.2 94 69.1
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 1.4e-30 137.9 90 70.0
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 1.8e-30 137.5 91 68.1
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 4.0e-30 136.3 90 68.9
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 5.2e-30 136.0 135 49.6
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 6.8e-30 135.6 93 65.6
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 2.0e-29 134.0 75 80.0
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 2.6e-29 133.7 87 65.5
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 4.4e-29 132.9 75 77.3
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 1.7e-28 131.0 90 67.8
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 2.2e-28 130.6 75 76.0
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 2.2e-28 130.6 88 61.4
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.9e-28 130.2 90 64.4
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 4.9e-28 129.4 93 61.3
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 5.4e-27 125.9 90 66.7
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 7.1e-27 125.6 65 75.4
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 9.2e-27 125.2 65 81.5
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 2.1e-26 124.0 65 75.4
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 6.0e-26 122.5 65 75.4
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 7.8e-26 122.1 86 57.0
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 7.8e-26 122.1 65 73.8
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 1.0e-25 121.7 65 76.9
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 1.3e-25 121.3 81 66.7
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 1.3e-25 121.3 81 66.7
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.0e-25 120.2 99 58.6
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 3.0e-25 120.2 65 81.5
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 1.1e-24 118.2 90 62.2
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 1.1e-24 118.2 90 62.2
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 2.5e-24 117.1 66 75.8
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 9.5e-24 115.2 67 73.1
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 2.1e-23 114.0 106 52.8
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.1e-22 111.7 93 59.1
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.1e-22 111.7 68 73.5
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.5e-21 107.8 90 58.9
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 4.1e-19 99.8 90 55.6
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 7.1e-19 99.0 65 70.8
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 4.6e-18 96.3 92 46.7
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.3e-17 94.7 58 74.1
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 5.1e-17 92.8 90 46.7
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 1.2e-15 88.2 71 59.2
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 1.2e-15 88.2 92 38.0
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 1.2e-15 88.2 85 45.9
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.2e-15 88.2 46 71.7
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 2.4e-14 84.0 98 42.9
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 6.9e-14 82.4 94 45.7
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.0e-13 80.9 90 48.9
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 5.8e-13 79.3 64 60.9
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 3.2e-11 73.6 75 48.0
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.5e-10 70.1 41 68.3
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 1.3e-09 68.2 42 69.0
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 3.9e-09 66.6 65 50.8
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 9.6e-08 62.0 31 80.6
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 9.6e-08 62.0 29 82.8
MCO05G513 Micromonas commoda HOM05D005049 ORTHO05D006032 5.3e-06 56.2 90 38.9
Actinidia36083 Actinidia chinensis HOM05D005049 ORTHO05D006032 6.9e-06 55.8 90 35.6


User provided reference genes

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