Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0134500 Rhododendron simsii HOM05D003109 ORTHO05D050678 2.7e-45 184.9 88 100.0
RhsimUnG0177400 Rhododendron simsii HOM05D003109 ORTHO05D050678 2.7e-45 184.9 88 100.0
Rhsim07G0107500 Rhododendron simsii HOM05D003109 ORTHO05D003578 1.4e-30 136.0 80 81.2
Rhsim05G0003100 Rhododendron simsii HOM05D003109 ORTHO05D003578 8.7e-20 100.1 64 76.6
vmacro03561 Vaccinium macrocarpon HOM05D003109 ORTHO05D003578 3.8e-15 84.7 80 56.2
Hma1.2p1_0185F.1_g081450 Hydrangea macrophylla HOM05D003109 ORTHO05D003578 7.2e-14 80.5 80 52.5
MBI18_g01517_MAGBIO Magnolia biondii HOM05D003109 ORTHO05D003578 1.2e-13 79.7 87 48.3
EL10Ac7g17661 Beta vulgaris HOM05D003109 ORTHO05D003578 4.6e-13 77.8 87 46.0
Actinidia33648 Actinidia chinensis HOM05D003109 ORTHO05D003578 1.0e-12 76.6 80 48.8
Migut.K00496 Erythranthe guttata HOM05D003109 ORTHO05D003578 2.3e-12 75.5 80 48.8
Nitab4.5_0000844g0340 Nicotiana tabacum HOM05D003109 ORTHO05D003578 3.9e-12 74.7 80 50.0
Dinv26304 Davidia involucrata HOM05D003109 ORTHO05D003578 6.7e-12 73.9 80 50.0
Dinv26326 Davidia involucrata HOM05D003109 ORTHO05D003578 6.7e-12 73.9 80 50.0
Potri.003G154900 Populus trichocarpa HOM05D003109 ORTHO05D003578 6.7e-12 73.9 80 45.0
Sabra03G0112100 Salix brachista HOM05D003109 ORTHO05D003578 6.7e-12 73.9 77 48.1
Atru.chr10.654 Acer truncatum HOM05D003109 ORTHO05D003578 8.8e-12 73.6 80 46.2
Manes.03G071100 Manihot esculenta HOM05D003109 ORTHO05D003578 8.8e-12 73.6 80 46.2
BcaB01g01432 Brassica carinata HOM05D003109 ORTHO05D003578 1.1e-11 73.2 80 46.2
Cc09_g04980 Coffea canephora HOM05D003109 ORTHO05D003578 1.1e-11 73.2 80 47.5
Ah.08g218200 Amaranthus hybridus HOM05D003109 ORTHO05D003578 1.5e-11 72.8 87 42.5
Aqoxy4G00011 Aquilegia oxysepala HOM05D003109 ORTHO05D003578 1.5e-11 72.8 80 46.2
Atru.chr10.290 Acer truncatum HOM05D003109 ORTHO05D003578 2.5e-11 72.0 80 45.0
Thecc.09G141000 Theobroma cacao HOM05D003109 ORTHO05D003578 2.5e-11 72.0 80 46.2
EL10Ac7g17662 Beta vulgaris HOM05D003109 ORTHO05D003578 3.3e-11 71.6 87 41.4
AUR62008776 Chenopodium quinoa HOM05D003109 ORTHO05D003578 3.3e-11 71.6 87 43.7
Peaxi162Scf00036g01013 Petunia axillaris HOM05D003109 ORTHO05D003578 3.3e-11 71.6 80 47.5
Sopen02g026500 Solanum pennellii HOM05D003109 ORTHO05D003578 3.3e-11 71.6 80 47.5
PGSC0003DMG400007330 Solanum tuberosum HOM05D003109 ORTHO05D003578 3.3e-11 71.6 80 47.5
Zm00001eb104710 Zea mays HOM05D003109 ORTHO05D003578 3.3e-11 71.6 80 43.8
Nitab4.5_0011308g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 4.3e-11 71.2 80 47.5
Solyc02g081880.3 Solanum lycopersicum HOM05D003109 ORTHO05D003578 4.3e-11 71.2 80 46.2
FvH4_3g13081 Fragaria vesca HOM05D003109 ORTHO05D003578 5.7e-11 70.9 80 43.8
FAN11G2415 Fragaria x ananassa HOM05D003109 ORTHO05D003578 5.7e-11 70.9 80 43.8
Lalb_Chr20g0114331 Lupinus albus HOM05D003109 ORTHO05D003578 5.7e-11 70.9 80 43.8
FAN25G0248 Fragaria x ananassa HOM05D003109 ORTHO05D003578 7.4e-11 70.5 80 43.8
FAN25G0950 Fragaria x ananassa HOM05D003109 ORTHO05D003578 7.4e-11 70.5 80 43.8
Gohir.A05G011600 Gossypium hirsutum HOM05D003109 ORTHO05D003578 7.4e-11 70.5 80 47.5
Gohir.D05G012500 Gossypium hirsutum HOM05D003109 ORTHO05D003578 7.4e-11 70.5 80 47.5
Gorai.N022400 Gossypium raimondii HOM05D003109 ORTHO05D003578 7.4e-11 70.5 80 47.5
CAN.G809.44 Capsicum annuum HOM05D003109 ORTHO05D003578 9.7e-11 70.1 80 47.5
FvH4_2g11200 Fragaria vesca HOM05D003109 ORTHO05D003578 9.7e-11 70.1 77 45.5
MD10G1226500 Malus domestica HOM05D003109 ORTHO05D003578 9.7e-11 70.1 80 41.2
CANSAT35G0308 Cannabis sativa HOM05D003109 ORTHO05D003578 1.3e-10 69.7 80 43.8
AUR62025463 Chenopodium quinoa HOM05D003109 ORTHO05D003578 1.3e-10 69.7 87 42.5
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 1.7e-10 69.3 80 45.0
Gorai.009G012600 Gossypium raimondii HOM05D003109 ORTHO05D003578 1.7e-10 69.3 80 46.2
AL1G45200 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 2.2e-10 68.9 77 46.8
MSTRG.14821 Avicennia marina HOM05D003109 ORTHO05D003578 2.2e-10 68.9 80 47.5
HanXRQChr07g0191351 Helianthus annuus HOM05D003109 ORTHO05D003578 2.2e-10 68.9 79 43.0
AT1G30910 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 2.8e-10 68.6 77 46.8
Duzib187G1888 Durio zibethinus HOM05D003109 ORTHO05D003578 2.8e-10 68.6 80 45.0
Gohir.D05G012300 Gossypium hirsutum HOM05D003109 ORTHO05D003578 2.8e-10 68.6 80 46.2
Sp6g07560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 2.8e-10 68.6 80 45.0
THA.LOC104798569 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 2.8e-10 68.6 77 48.1
CSS0007059 Camellia sinensis var. sinensis HOM05D003109 ORTHO05D003578 3.7e-10 68.2 77 48.1
Thhalv10011673m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 3.7e-10 68.2 77 45.5
FAN15G2849 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.7e-10 68.2 81 45.7
Cpa.g.sc30.95 Carica papaya HOM05D003109 ORTHO05D003578 4.8e-10 67.8 77 45.5
Ciclev10016075m.g Citrus clementina HOM05D003109 ORTHO05D003578 4.8e-10 67.8 80 45.0
DCAR_003753 Daucus carota HOM05D003109 ORTHO05D003578 4.8e-10 67.8 77 45.5
Aa31LG6G12320 Aethionema arabicum HOM05D000969 ORTHO05D000899 6.3e-10 67.4 80 45.0
Ciclev10016066m.g Citrus clementina HOM05D003109 ORTHO05D003578 6.3e-10 67.4 80 45.0
Eucgr.E04318 Eucalyptus grandis HOM05D003109 ORTHO05D003578 6.3e-10 67.4 76 47.4
Nn7g38363 Nelumbo nucifera HOM05D003109 ORTHO05D003578 6.3e-10 67.4 84 46.4
Phvul.009G243300 Phaseolus vulgaris HOM05D003109 ORTHO05D003578 6.3e-10 67.4 81 45.7
Hund12397 Selenicereus undatus HOM05D003109 ORTHO05D003578 6.3e-10 67.4 87 39.1
Sc17g0004290 Simmondsia chinensis HOM05D003109 ORTHO05D003578 6.3e-10 67.4 80 41.2
TWI38G1552 Tripterygium wilfordii HOM05D003109 ORTHO05D003578 6.3e-10 67.4 80 41.2
HPP92_016334 Vanilla planifolia HOM05D003109 ORTHO05D003578 8.2e-10 67.0 76 44.7
HPP92_016418 Vanilla planifolia HOM05D003109 ORTHO05D003578 8.2e-10 67.0 76 44.7
Lj1A1150T110 Lonicera japonica HOM05D003109 ORTHO05D003578 1.1e-09 66.6 74 45.9
RcHm_v2.0_Chr5g0021291 Rosa chinensis HOM05D003109 ORTHO05D003578 1.1e-09 66.6 78 44.9
SGA_v2.0_scaffold341G49369 Striga asiatica HOM05D003109 ORTHO05D003578 1.1e-09 66.6 80 46.2
VMungo1309G0023 Vigna mungo HOM05D003109 ORTHO05D003578 1.1e-09 66.6 81 45.7
GSVIVG01012158001 Vitis vinifera HOM05D003109 ORTHO05D003578 1.1e-09 66.6 80 42.5
Atru.chr10.222 Acer truncatum HOM05D003109 ORTHO05D003578 1.4e-09 66.2 75 45.3
HanXRQChr01g0006281 Helianthus annuus HOM05D003109 ORTHO05D003578 1.4e-09 66.2 80 41.2
Oeu018411.1 Olea europaea HOM05D003109 ORTHO05D003578 1.4e-09 66.2 80 43.8
RcHm_v2.0_Chr5g0021311 Rosa chinensis HOM05D003109 ORTHO05D003578 1.4e-09 66.2 80 42.5
Glyma.09G049900 Glycine max HOM05D003109 ORTHO05D003578 2.4e-09 65.5 81 44.4
ATR0763G182 Amborella trichopoda HOM05D003109 ORTHO05D003578 3.1e-09 65.1 80 42.5
Carub.0001s2928 Capsella rubella HOM05D003109 ORTHO05D003578 4.1e-09 64.7 77 44.2
CARHR258260 Cardamine hirsuta HOM05D003109 ORTHO05D003578 4.1e-09 64.7 75 45.3
Prupe.1G101100 Prunus persica HOM05D003109 ORTHO05D003578 4.1e-09 64.7 80 40.0
Zm00001eb104730 Zea mays HOM05D003109 ORTHO05D003578 4.1e-09 64.7 80 41.2
A09p29000 Brassica napus HOM05D003109 ORTHO05D003578 5.3e-09 64.3 80 42.5
CARHR030480 Cardamine hirsuta HOM05D003109 ORTHO05D003578 5.3e-09 64.3 77 44.2
Psat1g150920 Pisum sativum HOM05D003109 ORTHO05D003578 5.3e-09 64.3 81 44.4
QL10p022110 Quercus lobata HOM05D003109 ORTHO05D003578 5.3e-09 64.3 80 40.0
TAR627G0606 Trochodendron aralioides HOM05D003109 ORTHO05D003578 5.3e-09 64.3 78 47.4
ECA248G0390 Erigeron canadensis HOM05D003109 ORTHO05D003578 6.9e-09 63.9 80 40.0
Lsat_1_v5_gn_5_150720 Lactuca sativa HOM05D003109 ORTHO05D003578 6.9e-09 63.9 80 40.0
Medtr2g035460 Medicago truncatula HOM05D003109 ORTHO05D003578 6.9e-09 63.9 88 39.8
Nitab4.5_0001499g0020 Nicotiana tabacum HOM05D003109 ORTHO05D003578 6.9e-09 63.9 80 41.2
PGR042G1455 Punica granatum HOM05D003109 ORTHO05D003578 6.9e-09 63.9 80 42.5
MELO3C007005.2 Cucumis melo HOM05D003109 ORTHO05D003578 1.2e-08 63.2 80 40.0
CsaV3_6G053040 Cucumis sativus L. HOM05D003109 ORTHO05D003578 1.2e-08 63.2 80 40.0
BcaC04g20996 Brassica carinata HOM05D003109 ORTHO05D003578 1.5e-08 62.8 80 41.2
C09p36850 Brassica napus HOM05D003109 ORTHO05D003578 1.5e-08 62.8 80 41.2
BolC9t56516H Brassica oleracea HOM05D003109 ORTHO05D003578 1.5e-08 62.8 80 41.2
PGR042G3123 Punica granatum HOM05D003109 ORTHO05D003578 1.5e-08 62.8 80 41.2
Sopen01g018350 Solanum pennellii HOM05D003109 ORTHO05D003578 1.5e-08 62.8 87 37.9
BraA09t38464Z Brassica rapa HOM05D003109 ORTHO05D003578 2.6e-08 62.0 75 44.0
Sed0008992 Sechium edule HOM05D003109 ORTHO05D003578 2.6e-08 62.0 80 40.0
CDE01G0767 Ceratophyllum demersum HOM05D003109 ORTHO05D003578 3.4e-08 61.6 80 42.5
PGSC0003DMG400015860 Solanum tuberosum HOM05D003109 ORTHO05D003578 3.4e-08 61.6 80 38.8
TPR.G26578 Trifolium pratense HOM05D003109 ORTHO05D003578 3.4e-08 61.6 81 42.0
CiPaw.10G105800 Carya illinoinensis HOM05D003109 ORTHO05D003578 4.5e-08 61.2 80 37.5
RcHm_v2.0_Chr4g0419251 Rosa chinensis HOM05D003109 ORTHO05D003578 4.5e-08 61.2 80 41.2
Lj2A342T113 Lonicera japonica HOM05D003109 ORTHO05D003578 5.9e-08 60.8 87 41.4
Os09g0560800 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 5.9e-08 60.8 80 38.8
Cfa001141 Carpinus fangiana HOM05D003109 ORTHO05D003578 7.7e-08 60.5 80 38.8
Ca_01981_v3 Cicer arietinum L. HOM05D003109 ORTHO05D003578 7.7e-08 60.5 81 39.5
PSO675G6279 Papaver somniferum HOM05D003109 ORTHO05D003578 7.7e-08 60.5 82 40.2
PSO675G7745 Papaver somniferum HOM05D003109 ORTHO05D003578 7.7e-08 60.5 82 40.2
VMungo1309G1953 Vigna mungo HOM05D003109 ORTHO05D003578 7.7e-08 60.5 81 40.7
Zm00001eb104720 Zea mays HOM05D003109 ORTHO05D003578 7.7e-08 60.5 82 41.5
CAN.G97.16 Capsicum annuum HOM05D003109 ORTHO05D003578 1.0e-07 60.1 80 38.8
THA.LOC104811863 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 1.0e-07 60.1 77 45.5
Aa31sc456G20 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.3e-07 59.7 73 43.8
Medtr2g035470 Medicago truncatula HOM05D003109 ORTHO05D003578 1.3e-07 59.7 81 40.7
Phvul.009G243200 Phaseolus vulgaris HOM05D003109 ORTHO05D003578 1.3e-07 59.7 81 39.5
arahy.Tifrunner.gnm1.ann1.D1QZC1 Arachis hypogaea HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 37.5
BcaC06g31591 Brassica carinata HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
BcaC06g34519 Brassica carinata HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
A06p46990 Brassica napus HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
C07p27620 Brassica napus HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
BraA06t27571Z Brassica rapa HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
Thhalv10000970m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
Os09g0560700 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
Sp2g09530 Schrenkiella parvula HOM05D003109 ORTHO05D003578 2.2e-07 58.9 80 38.8
arahy.Tifrunner.gnm1.ann1.4IPC1A Arachis hypogaea HOM05D003109 ORTHO05D003578 2.9e-07 58.5 77 39.0
Nitab4.5_0004630g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 2.9e-07 58.5 73 41.1
Sed0014929 Sechium edule HOM05D003109 ORTHO05D003578 2.9e-07 58.5 80 37.5
Thhalv10001183m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 3.8e-07 58.2 80 38.8
ClCG01G025830 Citrullus lanatus HOM05D003109 ORTHO05D003578 5.0e-07 57.8 75 40.0
Glyma.09G050100 Glycine max HOM05D003109 ORTHO05D003578 5.0e-07 57.8 81 39.5
AL8G14810 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 6.5e-07 57.4 80 38.8
CARHR178180 Cardamine hirsuta HOM05D003109 ORTHO05D003578 6.5e-07 57.4 80 38.8
Medtr2g035480 Medicago truncatula HOM05D003109 ORTHO05D003578 6.5e-07 57.4 81 39.5
Carub.0008s0354 Capsella rubella HOM05D003109 ORTHO05D003578 8.5e-07 57.0 80 38.8
FvH4_3g13080 Fragaria vesca HOM05D003109 ORTHO05D003578 8.5e-07 57.0 68 41.2
RcHm_v2.0_Chr5g0008621 Rosa chinensis HOM05D003109 ORTHO05D003578 8.5e-07 57.0 90 36.7
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.1e-06 56.6 80 38.8
Lj6g0002854 Lotus japonicus HOM05D003109 ORTHO05D003578 1.1e-06 56.6 77 40.3
FAN21G3259 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.4e-06 56.2 92 34.8
BcaB07g30929 Brassica carinata HOM05D003109 ORTHO05D003578 1.9e-06 55.8 80 36.2
ECA247G2038 Erigeron canadensis HOM05D003109 ORTHO05D004733 1.9e-06 55.8 80 37.5
Lj6g0023516 Lotus japonicus HOM05D003109 ORTHO05D003578 1.9e-06 55.8 81 38.3
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.5e-06 55.5 80 36.2
BraA09t37733Z Brassica rapa HOM05D003109 ORTHO05D003578 2.5e-06 55.5 80 36.2
AT5G44720 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 3.2e-06 55.1 80 38.8
C09p27070 Brassica napus HOM05D003109 ORTHO05D003578 3.2e-06 55.1 80 36.2
BolC9t55590H Brassica oleracea HOM05D003109 ORTHO05D003578 3.2e-06 55.1 80 36.2
Mapoly0004s0282 Marchantia polymorpha HOM05D003109 ORTHO05D003578 4.2e-06 54.7 80 36.2
HanXRQChr10g0286441 Helianthus annuus HOM05D003109 ORTHO05D003578 5.5e-06 54.3 77 36.4
Solyc01g044370.3 Solanum lycopersicum HOM05D003109 ORTHO05D003578 7.2e-06 53.9 73 37.0
BcaB07g30928 Brassica carinata HOM05D003109 ORTHO05D003578 9.4e-06 53.5 80 37.5
RcHm_v2.0_Chr5g0021271 Rosa chinensis HOM05D003109 ORTHO05D003578 9.4e-06 53.5 90 35.6


User provided reference genes

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