Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.1e-59 233.0 109 100.0
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.1e-59 233.0 109 100.0
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.2e-50 203.0 103 92.2
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 4.5e-50 201.1 107 86.0
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 5.9e-50 200.7 99 96.0
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.0e-49 199.9 99 91.9
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 1.7e-49 199.1 99 94.9
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.7e-49 199.1 99 94.9
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 2.9e-49 198.4 99 93.9
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 2.9e-49 198.4 99 93.9
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 2.9e-49 198.4 99 93.9
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 3.8e-49 198.0 99 93.9
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 3.8e-49 198.0 99 90.9
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 3.8e-49 198.0 99 93.9
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 3.8e-49 198.0 99 93.9
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 5.0e-49 197.6 99 92.9
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 5.0e-49 197.6 99 92.9
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 5.0e-49 197.6 99 92.9
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 6.5e-49 197.2 99 93.9
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 6.5e-49 197.2 99 93.9
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 6.5e-49 197.2 102 90.2
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 8.5e-49 196.8 99 92.9
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 8.5e-49 196.8 99 89.9
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 8.5e-49 196.8 99 93.9
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 8.5e-49 196.8 99 92.9
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.4e-48 196.1 99 89.9
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.4e-48 196.1 99 91.9
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.4e-48 196.1 99 90.9
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.4e-48 196.1 99 93.9
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.4e-48 196.1 99 92.9
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.9e-48 195.7 99 88.9
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.9e-48 195.7 99 91.9
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 2.5e-48 195.3 99 91.9
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 2.5e-48 195.3 99 91.9
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.5e-48 195.3 99 92.9
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.5e-48 195.3 99 91.9
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 2.5e-48 195.3 99 92.9
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 2.5e-48 195.3 107 86.0
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 2.5e-48 195.3 99 91.9
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.5e-48 195.3 99 91.9
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 3.2e-48 194.9 99 91.9
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 3.2e-48 194.9 99 91.9
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 3.2e-48 194.9 99 92.9
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 3.2e-48 194.9 99 92.9
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.2e-48 194.9 99 92.9
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.2e-48 194.5 99 90.9
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 5.5e-48 194.1 99 89.9
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 5.5e-48 194.1 99 92.9
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 5.5e-48 194.1 99 91.9
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 5.5e-48 194.1 99 91.9
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 5.5e-48 194.1 99 89.9
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 5.5e-48 194.1 100 87.0
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 5.5e-48 194.1 99 87.9
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 7.2e-48 193.7 99 90.9
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 7.2e-48 193.7 99 91.9
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 9.4e-48 193.4 99 91.9
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.4e-48 193.4 99 91.9
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.4e-48 193.4 99 91.9
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.4e-48 193.4 99 91.9
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.4e-48 193.4 99 91.9
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 9.4e-48 193.4 99 90.9
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 9.4e-48 193.4 99 90.9
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 1.2e-47 193.0 99 90.9
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 1.2e-47 193.0 99 90.9
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.2e-47 193.0 99 90.9
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.6e-47 192.6 99 90.9
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 2.1e-47 192.2 99 90.9
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.1e-47 192.2 99 89.9
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 2.1e-47 192.2 99 90.9
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 2.7e-47 191.8 99 90.9
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 2.7e-47 191.8 99 89.9
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.7e-47 191.8 99 89.9
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.7e-47 191.8 99 89.9
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 3.6e-47 191.4 99 88.9
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 4.7e-47 191.0 99 89.9
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 4.7e-47 191.0 99 89.9
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 4.7e-47 191.0 99 89.9
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 4.7e-47 191.0 99 89.9
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 4.7e-47 191.0 99 89.9
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 6.1e-47 190.7 99 89.9
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 6.1e-47 190.7 99 91.9
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 6.1e-47 190.7 99 88.9
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 6.1e-47 190.7 99 88.9
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 8.0e-47 190.3 99 88.9
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.8e-46 189.1 99 90.9
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 1.8e-46 189.1 99 85.9
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 2.3e-46 188.7 99 88.9
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 2.3e-46 188.7 99 88.9
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 2.3e-46 188.7 99 88.9
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.3e-46 188.7 99 88.9
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 3.0e-46 188.3 99 86.9
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.0e-46 188.3 99 88.9
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.9e-46 188.0 99 88.9
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 3.9e-46 188.0 101 86.1
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.9e-46 188.0 99 88.9
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 5.2e-46 187.6 99 86.9
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 1.1e-45 186.4 99 87.9
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.1e-45 186.4 87 96.6
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 1.1e-45 186.4 99 88.9
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.5e-45 186.0 99 85.9
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.5e-45 186.0 98 86.7
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.5e-45 186.0 99 85.9
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.5e-45 186.0 99 85.9
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.5e-45 186.0 99 87.9
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 2.0e-45 185.7 99 83.8
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 2.6e-45 185.3 99 86.9
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 2.6e-45 185.3 99 86.9
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 2.6e-45 185.3 99 84.8
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 3.3e-45 184.9 99 85.9
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 7.4e-45 183.7 99 86.9
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 7.4e-45 183.7 99 86.9
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 1.3e-44 183.0 99 85.9
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.3e-44 183.0 99 85.9
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.3e-44 183.0 98 89.8
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.3e-44 183.0 99 86.9
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 1.3e-44 183.0 99 86.9
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 1.7e-44 182.6 98 86.7
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.7e-44 182.6 98 89.8
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 3.7e-44 181.4 99 83.8
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 6.3e-44 180.6 99 82.8
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.1e-43 179.9 101 87.1
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 9.1e-43 176.8 99 80.8
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 9.1e-43 176.8 99 82.8
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 2.0e-42 175.6 98 80.6
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 3.5e-42 174.9 99 77.8
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 3.5e-42 174.9 100 77.0
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 3.5e-42 174.9 100 81.0
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 5.9e-42 174.1 95 83.2
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 1.7e-41 172.6 94 87.2
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 2.9e-41 171.8 99 81.8
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.0e-38 163.3 99 75.8
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.2e-38 161.0 88 84.1
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.0e-30 136.7 116 61.2
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 4.5e-26 121.3 72 77.8
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 3.8e-25 118.2 100 52.0
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 7.2e-24 114.0 90 63.3
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 9.5e-24 113.6 87 55.2
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 6.8e-22 107.5 66 77.3
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 9.8e-21 103.6 202 37.1
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 3.1e-19 98.6 48 95.8
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.7e-18 95.5 50 86.0
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 9.5e-16 87.0 48 85.4
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.9e-12 74.7 106 36.8
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 9.2e-11 70.5 34 91.2
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.0e-10 69.3 34 88.2
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 3.9e-09 65.1 74 50.0
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 5.6e-08 61.2 32 84.4
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 8.9e-06 53.9 34 70.6


User provided reference genes

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