Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0173600 Rhododendron simsii HOM05D008219 ORTHO05D030892 5.8e-172 607.4 304 100.0
vmacro03674 Vaccinium macrocarpon HOM05D002950 ORTHO05D006701 3.0e-27 126.7 100 63.0
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 5.3e-24 115.9 120 50.0
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 5.5e-21 105.9 116 42.2
Rhsim10G0085300 Rhododendron simsii HOM05D008219 ORTHO05D038150 3.0e-19 100.1 137 47.4
Rhsim09G0150200 Rhododendron simsii HOM05D008219 ORTHO05D030892 7.0e-16 89.0 99 46.5
Actinidia12328 Actinidia chinensis HOM05D008219 ORTHO05D009356 1.7e-14 84.3 110 43.6
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-13 81.6 89 43.8
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 7.2e-13 79.0 109 38.5
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 7.2e-13 79.0 109 38.5
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.7e-12 76.3 89 41.6
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.7e-12 76.3 89 41.6
Rhsim09G0039900 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.0e-11 73.2 115 33.0
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.2e-11 72.8 89 41.6
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.8e-11 72.0 92 40.2
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-10 71.2 92 42.4
AUR62001927 Chenopodium quinoa HOM05D002093 ORTHO05D003877 2.0e-10 70.9 108 39.8
Gohir.A02G157200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 2.6e-10 70.5 52 63.5
Gorai.003G025200 Gossypium raimondii HOM05D002093 ORTHO05D003877 2.6e-10 70.5 52 63.5
AUR62003883 Chenopodium quinoa HOM05D002093 ORTHO05D003877 3.3e-10 70.1 70 50.0
Actinidia16482 Actinidia chinensis HOM05D002093 ORTHO05D003877 4.4e-10 69.7 58 60.3
Manes.13G124200 Manihot esculenta HOM05D002093 ORTHO05D003877 4.4e-10 69.7 67 53.7
Ca_22163_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 5.7e-10 69.3 47 61.7
Sc03g0001590 Simmondsia chinensis HOM05D002093 ORTHO05D003877 5.7e-10 69.3 50 64.0
Rhsim08G0100300 Rhododendron simsii HOM05D002093 ORTHO05D003877 7.5e-10 68.9 51 64.7
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 7.5e-10 68.9 120 31.7
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 9.7e-10 68.6 94 33.0
Cfa004024 Carpinus fangiana HOM05D002093 ORTHO05D003877 9.7e-10 68.6 48 66.7
Haze_15397 Corylus avellana HOM05D002093 ORTHO05D003877 9.7e-10 68.6 48 66.7
Lalb_Chr16g0378551 Lupinus albus HOM05D002093 ORTHO05D003877 9.7e-10 68.6 65 53.8
Psat0s1281g0040 Pisum sativum HOM05D002093 ORTHO05D003877 9.7e-10 68.6 47 61.7
TWI09G1584 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 9.7e-10 68.6 67 49.3
vmacro07030 Vaccinium macrocarpon HOM05D028517 ORTHO05D030532 9.7e-10 68.6 59 57.6
Gohir.D03G023700 Gossypium hirsutum HOM05D002093 ORTHO05D003877 1.7e-09 67.8 52 61.5
vmacro09252 Vaccinium macrocarpon HOM05D008219 ORTHO05D000487 1.7e-09 67.8 115 34.8
Actinidia36659 Actinidia chinensis HOM05D012898 ORTHO05D009356 2.2e-09 67.4 97 34.0
EL10Ac6g15743 Beta vulgaris HOM05D002093 ORTHO05D003877 2.2e-09 67.4 49 63.3
Lj4g0019433 Lotus japonicus HOM05D002093 ORTHO05D003877 2.2e-09 67.4 51 60.8
BcaC07g39493 Brassica carinata HOM05D002093 ORTHO05D003877 8.2e-09 65.5 51 58.8
C08p25380 Brassica napus HOM05D002093 ORTHO05D003877 8.2e-09 65.5 51 58.8
BolC8t50159H Brassica oleracea HOM05D002093 ORTHO05D003877 8.2e-09 65.5 51 58.8
vmacro14260 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 8.2e-09 65.5 82 37.8
Ah.02g124300 Amaranthus hybridus HOM05D002093 ORTHO05D003877 1.1e-08 65.1 53 56.6
TWI73G0884 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 1.1e-08 65.1 87 47.1
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 1.1e-08 65.1 77 40.3
SalBow1G1545 Salvia bowleyana HOM05D002093 ORTHO05D003877 1.4e-08 64.7 47 61.7
THA.LOC104821255 Tarenaya hassleriana HOM05D002093 ORTHO05D003877 1.4e-08 64.7 49 61.2
vmacro10949 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.4e-08 64.7 83 39.8
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.8e-08 64.3 89 36.0
DCAR_025734 Daucus carota HOM05D002093 ORTHO05D003877 2.4e-08 63.9 55 58.2
A09p43350 Brassica napus HOM05D002093 ORTHO05D003877 3.1e-08 63.5 51 56.9
BraA09t39804Z Brassica rapa HOM05D002093 ORTHO05D003877 3.1e-08 63.5 51 56.9
Carub.0005s1665 Capsella rubella HOM05D002093 ORTHO05D003877 3.1e-08 63.5 51 56.9
Rhsim10G0135400 Rhododendron simsii HOM05D001175 ORTHO05D003291 4.1e-08 63.2 112 33.9
Ca_24769_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 7.0e-08 62.4 49 57.1
Lalb_Chr09g0323191 Lupinus albus HOM05D002093 ORTHO05D003877 9.1e-08 62.0 51 56.9
Rhsim01G0057700 Rhododendron simsii HOM05D035845 ORTHO05D037452 9.1e-08 62.0 86 36.0
THA.LOC104827141 Tarenaya hassleriana HOM05D002093 ORTHO05D003877 9.1e-08 62.0 62 50.0
CARHR159800 Cardamine hirsuta HOM05D002093 ORTHO05D003877 1.2e-07 61.6 51 54.9
Lsat_1_v5_gn_4_166281 Lactuca sativa HOM05D002093 ORTHO05D003877 1.2e-07 61.6 119 37.0
MSTRG.23745 Avicennia marina HOM05D002093 ORTHO05D003877 1.6e-07 61.2 53 56.6
Gohir.A11G192500 Gossypium hirsutum HOM05D002093 ORTHO05D003877 1.6e-07 61.2 52 55.8
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-07 61.2 107 36.4
TWI53G0455 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 1.6e-07 61.2 46 63.0
TAR628G1162 Trochodendron aralioides HOM05D002093 ORTHO05D003877 1.6e-07 61.2 57 54.4
Dinv39847 Davidia involucrata HOM05D002093 ORTHO05D003877 2.0e-07 60.8 58 51.7
Thhalv10010424m.g Eutrema salsugineum HOM05D002093 ORTHO05D003877 2.0e-07 60.8 51 54.9
TPR.G19073 Trifolium pratense HOM05D002093 ORTHO05D003877 2.0e-07 60.8 49 55.1
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.0e-07 60.8 99 39.4
Actinidia21603 Actinidia chinensis HOM05D008219 ORTHO05D030892 2.7e-07 60.5 81 35.8
CSS0014053 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 2.7e-07 60.5 54 55.6
AT3G50340 Arabidopsis thaliana HOM05D002093 ORTHO05D003877 3.5e-07 60.1 51 52.9
FvH4_1g16070 Fragaria vesca HOM05D002093 ORTHO05D003877 3.5e-07 60.1 78 44.9
FAN19G2882 Fragaria x ananassa HOM05D002093 ORTHO05D003877 3.5e-07 60.1 78 44.9
FAN26G2318 Fragaria x ananassa HOM05D002093 ORTHO05D003877 3.5e-07 60.1 78 44.9
Manes.12G106900 Manihot esculenta HOM05D002093 ORTHO05D003877 3.5e-07 60.1 51 56.9
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.5e-07 60.1 108 36.1
RcHm_v2.0_Chr2g0105691 Rosa chinensis HOM05D002093 ORTHO05D003877 3.5e-07 60.1 76 46.1
CSS0045673 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 4.5e-07 59.7 58 53.4
Lj2g0008573 Lotus japonicus HOM05D002093 ORTHO05D003877 4.5e-07 59.7 49 55.1
Solyc02g090870.1 Solanum lycopersicum HOM05D002093 ORTHO05D003877 5.9e-07 59.3 50 52.0
Sopen02g035520 Solanum pennellii HOM05D002093 ORTHO05D003877 5.9e-07 59.3 50 52.0
PGSC0003DMG400004041 Solanum tuberosum HOM05D002093 ORTHO05D003877 5.9e-07 59.3 50 52.0
HanXRQChr09g0263831 Helianthus annuus HOM05D002093 ORTHO05D003877 7.7e-07 58.9 68 47.1
Actinidia26692 Actinidia chinensis HOM05D008219 ORTHO05D009356 1.0e-06 58.5 105 34.3
Cc07_g06000 Coffea canephora HOM05D002093 ORTHO05D003877 1.0e-06 58.5 50 56.0
Duzib187G1344 Durio zibethinus HOM05D002093 ORTHO05D003877 1.0e-06 58.5 52 53.8
Lj4C149T6 Lonicera japonica HOM05D002093 ORTHO05D003877 1.0e-06 58.5 57 49.1
Sabra07G0038900 Salix brachista HOM05D002093 ORTHO05D003877 1.0e-06 58.5 50 56.0
Actinidia33685 Actinidia chinensis HOM05D008219 ORTHO05D038150 1.3e-06 58.2 61 45.9
COL.COLO4_11417 Corchorus olitorius HOM05D002093 ORTHO05D003877 1.3e-06 58.2 49 53.1
Peaxi162Scf00450g00035 Petunia axillaris HOM05D002093 ORTHO05D003877 1.3e-06 58.2 74 41.9
Phvul.002G018800 Phaseolus vulgaris HOM05D002093 ORTHO05D003877 1.3e-06 58.2 54 50.0
Thecc.01G056400 Theobroma cacao HOM05D002093 ORTHO05D003877 1.3e-06 58.2 52 53.8
vmacro05338 Vaccinium macrocarpon HOM05D002093 ORTHO05D003877 1.3e-06 58.2 58 53.4
FAN23G2320 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.2e-06 57.4 78 43.6
FAN28G1260 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.2e-06 57.4 78 43.6
Lj5g0022095 Lotus japonicus HOM05D002777 ORTHO05D001516 2.2e-06 57.4 95 32.6
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 2.2e-06 57.4 116 33.6
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.2e-06 57.4 116 32.8
BcaB01g00624 Brassica carinata HOM05D002093 ORTHO05D003877 2.9e-06 57.0 52 50.0
EL10Ac4g10257 Beta vulgaris HOM05D008976 ORTHO05D011121 3.8e-06 56.6 75 40.0
CSS0047841 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 5.0e-06 56.2 105 33.3
Ciclev10025785m.g Citrus clementina HOM05D002093 ORTHO05D003877 5.0e-06 56.2 49 51.0
TPR.G30703 Trifolium pratense HOM05D002093 ORTHO05D003877 5.0e-06 56.2 50 56.0
AL5G30460 Arabidopsis lyrata HOM05D002093 ORTHO05D003877 6.5e-06 55.8 51 49.0
BcaC09g50022 Brassica carinata HOM05D002093 ORTHO05D003877 6.5e-06 55.8 48 52.1
C01p29900 Brassica napus HOM05D002093 ORTHO05D003877 6.5e-06 55.8 48 52.1
BolC1t02932H Brassica oleracea HOM05D002093 ORTHO05D003877 6.5e-06 55.8 48 52.1
ECA232G3993 Erigeron canadensis HOM05D002093 ORTHO05D003877 6.5e-06 55.8 54 57.4
Nitab4.5_0002016g0100 Nicotiana tabacum HOM05D002093 ORTHO05D003877 6.5e-06 55.8 50 50.0
QL06p041362 Quercus lobata HOM05D002093 ORTHO05D003877 6.5e-06 55.8 48 56.2
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 6.5e-06 55.8 69 42.0
CAN.G660.8 Capsicum annuum HOM05D002093 ORTHO05D003877 8.5e-06 55.5 50 50.0
CiPaw.01G018000 Carya illinoinensis HOM05D002093 ORTHO05D003877 8.5e-06 55.5 48 56.2
Gohir.D11G199200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 8.5e-06 55.5 52 50.0
Gorai.007G213400 Gossypium raimondii HOM05D002093 ORTHO05D003877 8.5e-06 55.5 52 50.0
PGR102G1838 Punica granatum HOM05D002093 ORTHO05D003877 8.5e-06 55.5 48 54.2
GSVIVG01022129001 Vitis vinifera HOM05D002093 ORTHO05D003877 8.5e-06 55.5 74 40.5


User provided reference genes

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