Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 3.5e-81 305.4 224 100.0
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 1.3e-32 144.1 228 56.6
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 3.0e-32 142.9 224 47.8
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 3.0e-32 142.9 224 42.0
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 4.8e-30 135.6 222 47.3
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 6.2e-30 135.2 223 39.9
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 1.1e-29 134.4 224 57.6
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 1.5e-28 130.6 222 45.5
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 2.0e-28 130.2 223 61.0
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.5e-28 129.0 224 37.9
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 6.5e-27 125.2 226 50.4
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 8.4e-27 124.8 225 38.7
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 3.2e-26 122.9 238 59.7
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.2e-26 122.5 224 37.5
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 5.5e-26 122.1 218 37.2
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 5.5e-26 122.1 261 33.3
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 4.6e-25 119.0 222 36.5
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 6.0e-25 118.6 220 34.5
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 7.9e-25 118.2 220 57.7
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.0e-24 116.3 224 49.1
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 3.0e-24 116.3 223 59.2
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 8.7e-24 114.8 222 44.1
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 4.3e-23 112.5 220 33.6
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 4.3e-23 112.5 225 36.4
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.3e-22 110.9 224 42.4
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 1.3e-22 110.9 225 52.0
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.1e-22 110.2 218 40.8
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 4.8e-22 109.0 224 37.9
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 4.8e-22 109.0 191 58.6
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 6.3e-22 108.6 261 43.7
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 2.4e-21 106.7 223 52.9
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 3.1e-21 106.3 221 57.5
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 3.1e-21 106.3 229 34.9
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 2.0e-20 103.6 220 55.9
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 2.6e-20 103.2 115 52.2
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 3.4e-20 102.8 122 44.3
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 3.4e-20 102.8 221 33.0
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 5.9e-20 102.1 230 33.0
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 1.0e-19 101.3 211 33.2
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.7e-19 100.5 233 37.3
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 6.5e-19 98.6 223 32.7
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 8.5e-19 98.2 222 50.5
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.4e-18 97.4 224 31.2
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 5.5e-18 95.5 224 32.1
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 9.3e-18 94.7 114 48.2
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 9.3e-18 94.7 225 55.6
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 9.3e-18 94.7 132 47.0
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.6e-17 94.0 223 52.5
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 2.1e-17 93.6 225 35.1
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 2.7e-17 93.2 222 40.1
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 3.6e-17 92.8 225 48.4
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 7.9e-17 91.7 226 32.7
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 1.8e-16 90.5 221 53.8
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 3.9e-16 89.4 222 46.4
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 6.7e-16 88.6 222 48.6
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 6.7e-16 88.6 223 55.2
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 4.3e-15 85.9 226 30.5
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 5.7e-15 85.5 208 51.0
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 9.7e-15 84.7 222 42.3
Rhsim07G0133700 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.3e-14 84.3 52 88.5
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 2.8e-14 83.2 225 30.2
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 2.8e-14 83.2 224 41.5
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 2.4e-13 80.1 223 52.9
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 2.4e-13 80.1 224 42.4
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 2.4e-13 80.1 220 25.5
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 4.1e-13 79.3 229 41.5
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 4.1e-13 79.3 227 29.5
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 5.3e-13 79.0 225 42.2
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 5.3e-13 79.0 225 42.2
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 5.3e-13 79.0 190 30.5
Rhsim03G0134900 Rhododendron simsii HOM05D001670 ORTHO05D015800 9.0e-13 78.2 45 86.7
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 2.0e-12 77.0 205 55.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.0e-12 77.0 79 63.3
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 2.6e-12 76.6 218 42.2
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 1.3e-11 74.3 222 35.6
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 1.7e-11 73.9 244 29.9
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 2.9e-11 73.2 85 51.8
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 5.0e-11 72.4 108 44.4
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 1.1e-10 71.2 145 37.2
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 1.9e-10 70.5 220 27.3
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 1.9e-10 70.5 216 48.6
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 3.2e-10 69.7 225 52.9
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 5.5e-10 68.9 191 52.4
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 7.2e-10 68.6 198 29.8
Hund13295 Selenicereus undatus HOM05D007214 ORTHO05D008907 3.6e-09 66.2 148 36.5
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 1.0e-08 64.7 123 32.5
HanXRQChr09g0265731 Helianthus annuus HOM05D007214 ORTHO05D008907 3.9e-08 62.8 234 46.6
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 8.8e-08 61.6 225 40.4
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 3.3e-07 59.7 225 51.6
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.2e-06 57.0 128 33.6
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 2.2e-06 57.0 37 70.3
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 3.7e-06 56.2 37 64.9
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 6.3e-06 55.5 138 29.0
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 8.2e-06 55.1 193 43.5


User provided reference genes

Program Settings