Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 6.7e-116 420.6 203 100.0
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 7.5e-91 337.4 202 77.7
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.2e-90 335.9 202 78.2
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.6e-88 329.7 202 77.2
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 3.9e-87 325.1 195 79.0
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 3.9e-87 325.1 195 79.0
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.3e-86 322.0 195 77.9
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 2.2e-82 309.3 205 73.7
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 3.7e-82 308.5 192 74.5
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 1.1e-81 307.0 198 73.7
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 4.1e-81 305.1 199 71.9
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 4.1e-81 305.1 193 75.1
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 9.2e-81 303.9 205 71.7
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 1.6e-80 303.1 195 74.4
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.6e-80 303.1 194 74.2
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 7.8e-80 300.8 174 79.3
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 1.0e-79 300.4 196 75.0
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 2.3e-79 299.3 174 78.7
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 8.6e-79 297.4 185 75.7
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 1.1e-78 297.0 174 79.3
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.5e-78 296.6 195 72.8
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 2.5e-78 295.8 188 72.9
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 2.5e-78 295.8 194 73.2
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 3.3e-78 295.4 204 69.1
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 5.6e-78 294.7 189 73.0
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 7.3e-78 294.3 192 72.4
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 9.5e-78 293.9 201 71.1
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 2.8e-77 292.4 189 72.5
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 2.8e-77 292.4 194 71.1
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 2.8e-77 292.4 197 71.1
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 6.2e-77 291.2 202 67.8
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 6.2e-77 291.2 190 73.7
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.4e-76 290.0 204 68.1
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 2.3e-76 289.3 197 71.6
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 3.1e-76 288.9 192 70.8
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.1e-76 288.9 194 70.6
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 4.0e-76 288.5 176 76.7
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 5.2e-76 288.1 192 71.9
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 5.2e-76 288.1 199 71.4
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.2e-76 288.1 181 74.0
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 8.9e-76 287.3 188 72.9
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 8.9e-76 287.3 188 72.9
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.2e-75 287.0 187 72.7
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 1.2e-75 287.0 154 90.3
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 2.0e-75 286.2 198 70.2
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.6e-75 285.8 192 68.8
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 4.4e-75 285.0 170 78.2
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 7.5e-75 284.3 183 72.7
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 7.5e-75 284.3 169 76.3
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 3.7e-74 282.0 204 69.1
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 4.9e-74 281.6 173 74.6
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 6.4e-74 281.2 193 68.4
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 6.4e-74 281.2 193 68.4
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 6.4e-74 281.2 193 71.0
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 6.4e-74 281.2 181 71.3
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.4e-73 280.0 196 68.4
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 1.9e-73 279.6 174 74.7
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 2.4e-73 279.3 198 67.7
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.2e-73 278.9 196 68.9
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 7.1e-73 277.7 196 69.4
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 7.1e-73 277.7 166 74.1
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 7.1e-73 277.7 166 74.1
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 9.2e-73 277.3 189 68.3
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 9.2e-73 277.3 196 68.9
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.2e-72 276.9 204 65.7
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 1.2e-72 276.9 174 73.6
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.6e-72 276.6 196 68.9
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 2.1e-72 276.2 185 70.3
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 2.7e-72 275.8 188 69.1
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 3.5e-72 275.4 197 67.0
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 3.5e-72 275.4 197 67.0
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.3e-71 273.5 189 67.2
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.3e-71 273.5 166 72.9
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.7e-71 273.1 174 70.1
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 3.0e-71 272.3 165 77.0
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 5.1e-71 271.6 204 64.7
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 5.1e-71 271.6 202 62.9
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 5.1e-71 271.6 187 70.6
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 5.1e-71 271.6 189 69.8
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.9e-70 269.6 168 72.6
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 2.5e-70 269.2 187 70.1
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 5.6e-70 268.1 167 72.5
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 5.6e-70 268.1 168 69.0
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 7.3e-70 267.7 188 68.1
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 7.3e-70 267.7 203 64.5
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 7.3e-70 267.7 176 71.0
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 1.6e-69 266.5 184 70.1
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 1.6e-69 266.5 189 65.1
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 2.8e-69 265.8 174 70.7
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 2.8e-69 265.8 193 64.8
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 6.2e-69 264.6 203 63.5
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 6.2e-69 264.6 188 67.6
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 6.2e-69 264.6 193 65.3
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.0e-68 261.9 195 65.1
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 8.9e-68 260.8 177 69.5
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 2.6e-67 259.2 168 67.9
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 9.9e-67 257.3 191 65.4
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 9.9e-67 257.3 175 65.1
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.3e-66 256.9 185 68.1
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.2e-66 256.1 189 64.0
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.2e-66 256.1 189 64.0
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 2.9e-66 255.8 176 69.9
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 4.9e-66 255.0 195 65.1
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.4e-65 252.7 166 68.1
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 1.6e-64 250.0 195 63.6
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 4.6e-64 248.4 147 74.8
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 5.6e-62 241.5 180 63.3
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 8.1e-61 237.7 175 64.6
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 1.1e-60 237.3 191 59.7
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.8e-60 236.5 186 58.1
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 2.9e-58 229.2 301 43.9
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 8.4e-58 227.6 191 58.6
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 1.4e-57 226.9 193 59.6
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 5.4e-57 224.9 193 58.5
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 5.4e-57 224.9 193 58.5
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 1.6e-56 223.4 193 58.5
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 2.5e-54 216.1 129 75.2
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 4.8e-53 211.8 175 57.1
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 2.4e-52 209.5 136 72.8
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 2.4e-52 209.5 164 61.0
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 3.4e-51 205.7 153 68.0
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 9.9e-51 204.1 170 54.7
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 6.4e-50 201.4 139 69.8
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 1.3e-47 193.7 126 72.2
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.7e-42 176.8 165 50.9
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 2.7e-40 169.5 167 54.5
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 6.0e-40 168.3 169 49.1
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.1e-36 156.0 166 49.4
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.9e-34 149.4 179 42.5
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.5e-34 148.3 181 45.3
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.2e-33 146.0 159 45.9
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.1e-28 131.0 79 74.7
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 3.1e-28 129.4 169 40.8
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 1.7e-26 123.6 202 32.2
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 2.4e-20 103.2 65 63.1
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.1e-17 94.4 168 33.3
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.3e-13 80.9 102 45.1
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 4.8e-13 79.0 62 56.5
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 4.7e-08 62.4 68 47.1
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.0e-07 61.2 64 57.8


User provided reference genes

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