Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 5.3e-86 321.2 194 100.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.3e-57 226.1 197 80.2
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 1.8e-54 216.5 209 73.2
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.7e-44 183.3 144 77.1
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.3e-44 183.0 208 65.4
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 3.0e-44 182.6 209 65.6
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 2.3e-36 156.4 199 57.3
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 7.3e-35 151.4 208 51.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.2e-34 150.6 208 53.8
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.1e-34 149.8 211 50.2
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.8e-34 149.4 213 54.9
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.1e-33 146.0 208 58.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 6.8e-33 144.8 209 57.9
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.3e-31 140.6 211 50.7
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 2.2e-31 139.8 206 53.4
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.4e-31 138.3 134 76.1
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.4e-30 136.3 210 54.3
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 3.2e-30 136.0 120 65.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 4.6e-29 132.1 209 52.6
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.6e-29 132.1 212 54.2
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 6.0e-29 131.7 210 57.1
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 7.8e-29 131.3 231 52.8
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 7.8e-29 131.3 209 53.1
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 7.8e-29 131.3 209 51.7
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.3e-28 130.6 141 58.9
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.7e-28 130.2 208 54.8
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.3e-28 129.8 214 56.1
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 6.6e-28 128.3 209 47.8
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 8.6e-28 127.9 139 58.3
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.1e-27 127.5 222 44.6
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.5e-27 127.1 209 52.2
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.9e-27 126.7 209 49.8
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.9e-27 126.7 210 53.8
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.3e-27 124.8 137 58.4
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.2e-26 124.0 212 51.4
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 1.2e-26 124.0 208 50.5
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.8e-26 122.9 210 53.8
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 3.6e-26 122.5 209 46.4
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 4.7e-26 122.1 207 52.7
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.7e-26 122.1 141 55.3
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 6.2e-26 121.7 228 46.9
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 6.2e-26 121.7 206 52.4
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.4e-25 120.6 138 56.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 3.1e-25 119.4 208 43.3
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.1e-25 119.4 210 49.0
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.1e-25 119.4 209 53.6
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 4.0e-25 119.0 143 52.4
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 5.2e-25 118.6 209 45.0
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 5.2e-25 118.6 143 53.8
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 6.8e-25 118.2 137 54.0
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 6.8e-25 118.2 143 52.4
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 6.8e-25 118.2 208 51.4
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 8.9e-25 117.9 207 44.0
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 8.9e-25 117.9 135 55.6
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.2e-24 117.5 139 52.5
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.2e-24 117.5 207 54.1
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.2e-24 117.5 143 53.1
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 3.4e-24 115.9 208 43.8
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 3.4e-24 115.9 207 47.3
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 3.4e-24 115.9 209 45.5
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 3.4e-24 115.9 216 43.1
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 7.6e-24 114.8 205 45.9
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 7.6e-24 114.8 142 54.2
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 7.6e-24 114.8 142 50.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 7.6e-24 114.8 141 53.2
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 9.9e-24 114.4 136 56.6
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.3e-23 114.0 142 50.7
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.3e-23 114.0 207 48.8
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 1.3e-23 114.0 124 54.0
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.7e-23 113.6 202 50.5
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.2e-23 113.2 142 52.8
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 2.2e-23 113.2 142 52.1
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.9e-23 112.8 204 46.6
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.8e-23 112.5 142 50.0
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 4.9e-23 112.1 142 52.1
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.9e-23 112.1 235 45.5
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 6.4e-23 111.7 210 46.7
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.1e-22 110.9 139 51.1
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 1.1e-22 110.9 205 48.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.4e-22 110.5 207 42.0
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.9e-22 110.2 208 48.1
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.4e-22 109.8 207 48.3
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.4e-22 109.8 208 50.0
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.2e-22 109.4 143 51.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.1e-22 109.0 208 51.4
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 5.4e-22 108.6 146 51.4
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 5.4e-22 108.6 213 40.8
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 142 51.4
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.6e-21 107.1 140 52.9
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.6e-21 105.5 137 50.4
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 7.8e-21 104.8 208 49.0
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.3e-20 104.0 189 50.8
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.3e-20 104.0 218 49.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.3e-20 104.0 208 50.5
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 3.0e-20 102.8 136 47.8
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 3.9e-20 102.4 139 48.9
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 5.1e-20 102.1 167 57.5
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-19 100.9 209 45.0
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.5e-19 100.5 208 49.5
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.9e-19 100.1 208 49.0
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 2.1e-18 96.7 194 47.9
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 6.2e-18 95.1 153 46.4
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.1e-17 94.4 128 49.2
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 3.1e-17 92.8 139 47.5
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 5.2e-17 92.0 132 50.8
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 6.9e-17 91.7 58 81.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.2e-16 90.9 141 44.7
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.5e-16 90.5 209 42.1
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 2.0e-16 90.1 132 50.8
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 2.6e-16 89.7 121 51.2
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.6e-16 89.7 216 38.9
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 1.3e-15 87.4 144 44.4
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 2.2e-15 86.7 82 61.0
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 2.2e-15 86.7 144 43.8
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 2.4e-14 83.2 124 46.0
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 4.2e-14 82.4 137 54.7
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.2e-14 82.4 65 69.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 7.1e-14 81.6 204 36.3
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 7.1e-14 81.6 204 36.3
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 7.1e-14 81.6 194 43.8
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 7.1e-14 81.6 144 43.1
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 7.1e-14 81.6 144 43.1
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 9.3e-14 81.3 137 43.8
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.2e-13 80.9 126 46.0
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-13 80.9 126 46.0
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.2e-13 80.9 126 46.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.6e-13 80.5 126 44.4
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.7e-13 79.7 43 90.7
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 3.5e-13 79.3 124 45.2
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 3.5e-13 79.3 124 45.2
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 6.0e-13 78.6 144 41.7
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.3e-12 77.4 126 42.9
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 3.0e-12 76.3 124 42.7
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 5.1e-12 75.5 126 42.9
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 5.1e-12 75.5 74 58.1
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 6.6e-12 75.1 53 71.7
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 8.7e-12 74.7 72 58.3
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.1e-11 74.3 77 58.4
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.1e-11 74.3 53 73.6
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-11 74.3 186 37.1
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.9e-11 73.6 50 74.0
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 3.3e-11 72.8 126 42.1
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 3.3e-11 72.8 126 42.1
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 3.3e-11 72.8 126 42.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.1e-10 70.1 141 36.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.9e-09 65.1 125 50.4
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 2.0e-08 63.5 53 66.0
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 9.9e-08 61.2 66 59.1


User provided reference genes

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