Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.1e-72 274.6 138 100.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.3e-57 224.2 162 75.3
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.0e-54 216.9 162 72.2
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 5.5e-53 211.1 162 70.4
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.0e-52 207.2 162 69.1
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.0e-52 207.2 162 69.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.7e-51 204.1 162 67.9
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.7e-51 204.1 162 67.3
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 4.4e-50 201.4 157 70.7
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.7e-50 201.1 164 65.9
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.7e-49 199.5 162 66.7
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.7e-49 199.5 164 64.6
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.8e-49 198.7 129 76.7
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.8e-49 198.7 167 62.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.8e-49 198.7 162 64.2
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.8e-49 198.7 164 64.6
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 4.8e-49 198.0 162 64.8
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 6.3e-49 197.6 162 64.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 6.3e-49 197.6 161 64.6
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.2e-49 197.2 169 64.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-48 196.4 161 65.2
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.8e-48 196.1 162 63.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.8e-48 196.1 164 64.6
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.1e-48 195.3 164 62.2
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 9.1e-48 193.7 163 62.0
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.2e-47 193.4 162 63.6
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.6e-47 193.0 164 63.4
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 3.5e-47 191.8 162 62.3
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.5e-47 191.8 130 73.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 4.5e-47 191.4 162 62.3
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.5e-47 191.4 162 61.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.5e-47 191.4 162 61.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.5e-47 191.4 129 74.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 5.9e-47 191.0 164 61.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.9e-47 191.0 160 64.4
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 5.9e-47 191.0 160 64.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.9e-47 191.0 160 64.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 7.7e-47 190.7 162 61.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.7e-47 190.7 162 63.0
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.3e-46 189.9 162 61.7
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.3e-46 189.9 166 60.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.3e-46 189.9 166 60.2
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.7e-46 189.5 162 62.3
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-46 189.5 130 73.1
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.7e-46 189.5 162 61.7
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 2.2e-46 189.1 159 64.8
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.2e-46 189.1 162 62.3
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.2e-46 189.1 163 64.4
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.8e-46 188.3 162 61.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 5.0e-46 188.0 160 63.1
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 5.0e-46 188.0 162 61.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 5.0e-46 188.0 162 61.7
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 6.5e-46 187.6 164 61.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 6.5e-46 187.6 162 61.1
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.5e-46 187.6 162 60.5
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 8.5e-46 187.2 162 61.7
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.1e-45 186.8 164 61.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-45 186.8 162 63.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-45 186.8 162 61.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.5e-45 186.4 162 61.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.5e-45 186.4 162 60.5
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.9e-45 186.0 164 57.9
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.5e-45 185.7 163 61.3
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.2e-45 185.3 162 60.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.2e-45 185.3 168 57.7
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 4.2e-45 184.9 162 60.5
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.5e-45 184.5 162 59.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 5.5e-45 184.5 166 61.4
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.2e-44 183.3 164 59.8
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.1e-44 182.6 162 59.3
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.1e-44 182.6 162 59.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.7e-44 182.2 167 58.1
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.6e-44 181.8 162 58.6
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 3.6e-44 181.8 162 58.6
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.6e-44 181.8 162 60.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.7e-44 181.4 162 59.3
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 4.7e-44 181.4 168 57.7
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 6.1e-44 181.0 162 59.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 6.1e-44 181.0 161 60.2
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 6.1e-44 181.0 149 67.1
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 8.0e-44 180.6 159 61.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.4e-43 179.9 162 58.0
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.4e-43 179.9 162 58.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.8e-43 179.5 162 58.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 5.2e-43 177.9 161 61.5
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.2e-42 176.8 162 58.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.2e-42 176.8 162 57.4
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.2e-42 176.8 159 59.1
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.6e-42 175.6 161 60.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.4e-42 175.3 162 58.0
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 4.4e-42 174.9 163 60.1
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.4e-42 174.9 162 58.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.4e-42 174.9 159 61.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 4.4e-42 174.9 161 58.4
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 5.7e-42 174.5 159 59.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 7.5e-42 174.1 163 59.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.2e-41 172.6 164 56.7
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.8e-41 172.2 162 59.3
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.8e-41 171.4 165 55.8
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.1e-40 170.2 160 56.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-40 169.9 159 59.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.4e-40 169.1 158 57.6
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.4e-40 169.1 159 59.7
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.4e-40 169.1 165 58.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 4.1e-40 168.3 162 58.6
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.2e-39 166.8 156 60.3
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.6e-39 166.4 161 57.8
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.0e-39 166.0 159 57.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.5e-39 165.2 162 57.4
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.5e-39 165.2 161 59.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.9e-39 164.5 160 56.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.0e-38 163.7 159 55.3
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.7e-38 162.9 162 58.0
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.9e-38 162.2 161 55.9
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.0e-38 161.4 159 54.1
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.5e-38 161.0 159 54.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 6.5e-38 161.0 162 53.7
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.1e-37 160.2 161 55.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.9e-37 159.5 161 54.7
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-37 159.5 160 55.6
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.9e-37 159.5 161 54.7
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.9e-37 159.5 159 54.1
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.2e-37 158.7 160 55.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.2e-37 158.7 160 55.6
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 7.2e-37 157.5 159 52.8
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 9.4e-37 157.1 165 53.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-36 156.4 159 52.8
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.1e-36 156.0 161 54.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.1e-36 156.0 133 61.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 4.7e-36 154.8 159 51.6
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.1e-36 154.5 163 52.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 6.1e-36 154.5 160 55.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 6.1e-36 154.5 160 52.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.0e-35 152.1 159 52.2
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 4.0e-35 151.8 162 51.9
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.2e-35 151.4 95 74.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 8.8e-35 150.6 95 75.8
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-34 149.1 161 50.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-33 145.6 162 53.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-32 143.7 162 52.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.4e-32 143.3 162 52.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-32 143.3 162 52.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.4e-32 141.4 160 50.0
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 7.0e-32 141.0 164 49.4
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.5e-31 138.7 170 47.1
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.9e-31 137.9 160 46.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.1e-29 133.7 165 44.8
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-29 133.3 176 48.3
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-29 133.3 94 66.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.6e-28 129.8 161 49.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.6e-28 129.8 91 67.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 2.8e-28 129.0 166 50.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.6e-28 128.6 97 70.1
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-27 127.1 167 45.5
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.4e-27 126.7 127 57.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 5.2e-27 124.8 125 57.6
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.2e-27 124.8 156 45.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-26 122.9 128 54.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.2e-25 119.4 159 42.8
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.9e-25 119.0 118 58.5
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.5e-23 112.1 125 53.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.2e-20 103.6 118 51.7
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.6e-20 102.1 142 40.1
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 6.1e-20 101.3 130 48.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.1e-20 101.3 132 47.7
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.8e-19 99.8 117 48.7
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.4e-18 95.1 75 68.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.3e-17 90.9 151 33.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.4e-16 88.2 74 63.5
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.5e-13 79.3 51 74.5
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-12 77.0 103 47.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 6.8e-11 71.2 36 88.9
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-10 68.9 50 64.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.4e-10 68.6 36 83.3
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-07 57.8 39 66.7
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.0e-06 57.4 39 71.8


User provided reference genes

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