Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 3.7e-166 588.2 305 100.0
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.1e-165 586.6 305 99.7
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 4.0e-136 488.4 327 80.4
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 5.6e-114 414.8 251 82.5
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.6e-113 413.3 329 70.2
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.7e-110 403.3 310 71.0
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 4.9e-110 401.7 308 71.8
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.7e-108 396.0 308 67.9
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 4.6e-108 395.2 253 78.3
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 6.6e-107 391.3 251 77.7
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 8.6e-107 391.0 302 68.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.5e-106 390.2 320 65.6
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 7.3e-106 387.9 302 68.2
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.2e-105 387.1 302 68.5
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 6.2e-105 384.8 250 77.6
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.0e-104 384.0 242 79.8
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.0e-104 384.0 288 69.1
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.4e-104 383.6 251 76.9
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 1.8e-104 383.3 305 67.2
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.3e-104 382.9 303 69.0
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 2.6e-103 379.4 245 77.1
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 5.8e-103 378.3 309 64.1
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 7.5e-103 377.9 249 76.3
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.5e-103 377.9 300 67.3
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 9.8e-103 377.5 262 73.7
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.7e-102 376.7 277 71.1
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 2.9e-102 375.9 306 66.7
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 3.7e-102 375.6 306 66.7
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 4.9e-102 375.2 246 75.6
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 4.9e-102 375.2 246 75.6
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 8.3e-102 374.4 304 64.8
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.9e-101 373.2 287 67.2
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.9e-101 373.2 287 67.6
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.4e-101 372.9 302 64.9
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 2.4e-101 372.9 249 75.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 3.2e-101 372.5 280 68.6
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.1e-101 372.1 287 67.6
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 4.1e-101 372.1 302 66.6
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 9.2e-101 370.9 302 65.6
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 9.2e-101 370.9 250 73.6
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 9.2e-101 370.9 301 66.4
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.6e-100 370.2 249 74.3
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 2.0e-100 369.8 249 73.1
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 2.0e-100 369.8 247 72.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.7e-100 369.4 266 68.8
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 3.5e-100 369.0 249 72.7
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 4.6e-100 368.6 302 63.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 3.0e-99 365.9 240 73.8
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 3.0e-99 365.9 248 74.2
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 5.0e-99 365.2 247 71.3
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 6.6e-99 364.8 251 72.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.5e-98 363.6 287 67.9
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.5e-98 363.6 247 71.3
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.5e-98 363.6 286 64.3
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 2.5e-98 362.8 305 64.3
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 2.5e-98 362.8 246 72.0
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 2.5e-98 362.8 300 62.0
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 3.3e-98 362.5 302 64.2
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 5.6e-98 361.7 300 61.7
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 9.5e-98 360.9 300 65.3
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.2e-97 360.5 254 71.3
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.6e-97 360.1 254 71.3
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 1.6e-97 360.1 301 65.4
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.6e-97 360.1 257 69.3
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.6e-97 360.1 285 68.1
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 3.6e-97 359.0 247 74.1
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 4.7e-97 358.6 224 77.7
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 6.2e-97 358.2 300 64.7
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 8.1e-97 357.8 305 63.3
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 2.3e-96 356.3 249 73.1
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 3.1e-96 355.9 302 64.2
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 3.1e-96 355.9 301 64.8
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.5e-95 353.6 300 63.7
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.5e-95 353.6 280 64.3
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.5e-95 353.6 274 69.0
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 2.6e-95 352.8 301 63.5
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 3.4e-95 352.4 294 63.6
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 3.4e-95 352.4 303 62.4
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.9e-94 349.4 247 67.6
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 4.9e-94 348.6 250 70.0
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.1e-93 347.4 244 70.9
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.4e-93 347.1 301 62.8
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 3.2e-93 345.9 283 62.9
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 5.4e-93 345.1 250 69.2
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 4.6e-92 342.0 265 63.8
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 8.6e-91 337.8 219 73.5
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 3.3e-90 335.9 255 67.5
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.8e-88 330.1 308 57.5
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 6.4e-86 321.6 273 63.7
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.1e-85 320.9 225 68.4
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.1e-85 320.9 245 62.9
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.9e-85 320.1 256 65.2
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 5.4e-85 318.5 250 66.0
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.1e-84 316.6 304 59.2
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 6.0e-84 315.1 204 77.9
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.3e-83 313.9 227 69.2
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.3e-83 313.9 238 64.3
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 1.9e-82 310.1 227 71.4
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 4.7e-81 305.4 243 61.3
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 5.8e-79 298.5 250 60.4
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 3.8e-78 295.8 244 58.6
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 7.1e-77 291.6 208 67.8
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 6.0e-76 288.5 247 59.1
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.0e-75 287.7 183 79.8
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.6e-73 279.3 206 69.4
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 9.0e-72 274.6 271 54.2
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 4.3e-66 255.8 249 55.4
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.0e-59 234.6 140 77.1
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 3.1e-48 196.4 151 67.5
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 5.0e-46 189.1 223 47.5
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.4e-45 187.6 216 45.8
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.0e-38 164.9 214 42.1
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 3.6e-36 156.4 170 52.9
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 4.1e-32 142.9 137 57.7
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.0e-31 140.6 86 76.7
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 9.4e-21 105.1 136 48.5
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 1.2e-20 104.8 82 59.8
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.4e-19 101.3 64 71.9
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 4.0e-19 99.8 68 64.7
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 6.7e-19 99.0 122 50.0
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 5.7e-18 95.9 56 80.4
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 2.8e-17 93.6 62 71.0
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 4.1e-16 89.7 175 36.6
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.0e-15 87.4 63 61.9
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 4.5e-15 86.3 66 63.6
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 5.0e-14 82.8 170 37.1
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 5.5e-13 79.3 87 51.7
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.6e-12 77.8 51 68.6
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.0e-11 75.1 49 69.4
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 6.8e-11 72.4 45 75.6
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.0e-10 70.9 53 60.4
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 2.0e-10 70.9 43 76.7
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 2.8e-09 67.0 82 47.6
RcHm_v2.0_Chr1g0313101 Rosa chinensis HOM05D005950 ORTHO05D342078 6.5e-06 55.8 36 72.2


User provided reference genes

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