Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0152300 Rhododendron simsii HOM05D002183 ORTHO05D002169 1.8e-90 335.9 166 100.0
RhsimUnG0152400 Rhododendron simsii HOM05D000228 ORTHO05D001545 2.0e-73 279.3 160 88.8
Rhsim10G0204600 Rhododendron simsii HOM05D002183 ORTHO05D002169 1.9e-52 209.5 131 81.7
vmacro20499 Vaccinium macrocarpon HOM05D002183 ORTHO05D002169 6.0e-46 188.0 114 79.8
RhsimUnG0152600 Rhododendron simsii HOM05D002183 ORTHO05D002169 1.3e-43 180.3 103 86.4
CSS0002031 Camellia sinensis var. sinensis HOM05D002183 ORTHO05D002169 9.6e-36 154.1 110 68.2
Dinv08544 Davidia involucrata HOM05D002183 ORTHO05D002169 5.3e-34 148.3 111 63.1
Hma1.2p1_0552F.1_g177710 Hydrangea macrophylla HOM05D002183 ORTHO05D002169 3.2e-31 139.0 109 60.6
Ciclev10026059m.g Citrus clementina HOM05D002183 ORTHO05D002169 4.3e-28 128.6 111 55.0
Actinidia22934 Actinidia chinensis HOM05D002183 ORTHO05D002169 9.6e-28 127.5 110 60.9
Dinv40150 Davidia involucrata HOM05D002183 ORTHO05D002169 6.2e-27 124.8 112 57.1
TAR628G0358 Trochodendron aralioides HOM05D002183 ORTHO05D002169 1.1e-26 124.0 111 56.8
Manes.01G151500 Manihot esculenta HOM05D002183 ORTHO05D002169 1.4e-26 123.6 112 55.4
Potri.005G105900 Populus trichocarpa HOM05D002183 ORTHO05D002169 1.2e-25 120.6 113 56.6
Sabra05G0086600 Salix brachista HOM05D002183 ORTHO05D002169 2.0e-25 119.8 113 55.8
Manes.02G110900 Manihot esculenta HOM05D002183 ORTHO05D002169 5.8e-25 118.2 112 52.7
Nn6g31888 Nelumbo nucifera HOM05D002183 ORTHO05D002169 5.8e-25 118.2 111 52.3
Cpa.g.sc6.320 Carica papaya HOM05D002183 ORTHO05D002169 1.0e-24 117.5 109 52.3
Thecc.01G010700 Theobroma cacao HOM05D002183 ORTHO05D002169 1.0e-24 117.5 111 54.1
GSVIVG01005413001 Vitis vinifera HOM05D002183 ORTHO05D002169 1.3e-24 117.1 108 55.6
Peaxi162Scf00328g00014 Petunia axillaris HOM05D002183 ORTHO05D002169 1.7e-24 116.7 111 50.5
Cc07_g11390 Coffea canephora HOM05D002183 ORTHO05D002169 2.2e-24 116.3 111 51.4
Prupe.7G175700 Prunus persica HOM05D002183 ORTHO05D002169 9.3e-23 110.9 110 52.7
Lsat_1_v5_gn_4_144000 Lactuca sativa HOM05D002183 ORTHO05D002169 1.2e-22 110.5 110 47.3
Solyc02g083310.3 Solanum lycopersicum HOM05D002183 ORTHO05D002169 1.2e-22 110.5 129 43.4
PGSC0003DMG400003593 Solanum tuberosum HOM05D002183 ORTHO05D002169 1.2e-22 110.5 129 43.4
Gohir.A02G174900 Gossypium hirsutum HOM05D002183 ORTHO05D002169 1.6e-22 110.2 111 51.4
QL06p052261 Quercus lobata HOM05D002183 ORTHO05D002169 1.6e-22 110.2 110 50.0
Atru.chr3.915 Acer truncatum HOM05D002183 ORTHO05D002169 2.1e-22 109.8 112 52.7
Atru.chr3.920 Acer truncatum HOM05D002183 ORTHO05D002169 2.1e-22 109.8 112 52.7
MBI05_g32277_MAGBIO Magnolia biondii HOM05D002183 ORTHO05D002169 2.1e-22 109.8 111 50.5
Gohir.D03G004900 Gossypium hirsutum HOM05D002183 ORTHO05D002169 2.7e-22 109.4 111 51.4
MD02G1122800 Malus domestica HOM05D002183 ORTHO05D002169 2.7e-22 109.4 110 50.9
Gorai.003G005200 Gossypium raimondii HOM05D002183 ORTHO05D002169 3.5e-22 109.0 111 51.4
PGR119G0261 Punica granatum HOM05D002183 ORTHO05D002169 3.5e-22 109.0 110 46.4
Nitab4.5_0007311g0030 Nicotiana tabacum HOM05D002183 ORTHO05D002169 4.6e-22 108.6 111 48.6
ATR0661G224 Amborella trichopoda HOM05D002183 ORTHO05D002169 6.1e-22 108.2 111 50.5
CAN.G890.23 Capsicum annuum HOM05D002183 ORTHO05D002169 6.1e-22 108.2 111 46.8
FAN28G3018 Fragaria x ananassa HOM05D002183 ORTHO05D002169 6.1e-22 108.2 110 50.9
Nitab4.5_0001696g0030 Nicotiana tabacum HOM05D002183 ORTHO05D002169 6.1e-22 108.2 111 48.6
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 6.1e-22 108.2 110 50.0
Sopen02g028100 Solanum pennellii HOM05D002183 ORTHO05D002169 7.9e-22 107.8 129 42.6
FvH4_1g10980 Fragaria vesca HOM05D002183 ORTHO05D002169 3.0e-21 105.9 110 50.0
FAN19G1406 Fragaria x ananassa HOM05D002183 ORTHO05D002169 3.0e-21 105.9 110 50.0
TWI53G0422 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 6.7e-21 104.8 110 51.8
CANSAT25G1446 Cannabis sativa HOM05D002183 ORTHO05D002169 8.7e-21 104.4 114 47.4
FAN26G0930 Fragaria x ananassa HOM05D002183 ORTHO05D002169 8.7e-21 104.4 110 49.1
HPP92_022386 Vanilla planifolia HOM05D002183 ORTHO05D002169 8.7e-21 104.4 110 46.4
MD15G1236800 Malus domestica HOM05D002183 ORTHO05D002169 1.5e-20 103.6 130 44.6
FAN23G0302 Fragaria x ananassa HOM05D002183 ORTHO05D002169 1.9e-20 103.2 110 49.1
RcHm_v2.0_Chr2g0098241 Rosa chinensis HOM05D002183 ORTHO05D002169 1.9e-20 103.2 110 49.1
arahy.Tifrunner.gnm1.ann1.NV91S6 Arachis hypogaea HOM05D002183 ORTHO05D002169 3.3e-20 102.4 109 46.8
arahy.Tifrunner.gnm1.ann1.QU53NP Arachis hypogaea HOM05D002183 ORTHO05D002169 3.3e-20 102.4 109 46.8
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 4.3e-20 102.1 111 44.1
A09p10200 Brassica napus HOM05D002183 ORTHO05D002169 5.7e-20 101.7 172 37.8
BraA09t36665Z Brassica rapa HOM05D002183 ORTHO05D002169 5.7e-20 101.7 172 37.8
HanXRQChr09g0257031 Helianthus annuus HOM05D002183 ORTHO05D002169 5.7e-20 101.7 110 47.3
AL8G45560 Arabidopsis lyrata HOM05D002183 ORTHO05D002169 1.3e-19 100.5 111 45.0
AT5G66050 Arabidopsis thaliana HOM05D002183 ORTHO05D002169 1.3e-19 100.5 111 44.1
C09p12090 Brassica napus HOM05D002183 ORTHO05D002169 1.3e-19 100.5 147 37.4
BolC9t54099H Brassica oleracea HOM05D002183 ORTHO05D002169 1.3e-19 100.5 147 37.4
BcaC04g23107 Brassica carinata HOM05D002183 ORTHO05D002169 2.2e-19 99.8 139 37.4
Gorai.007G190300 Gossypium raimondii HOM05D002183 ORTHO05D002169 2.2e-19 99.8 113 48.7
ECA232G4480 Erigeron canadensis HOM05D002183 ORTHO05D002169 2.8e-19 99.4 110 46.4
Sp2g30640 Schrenkiella parvula HOM05D002183 ORTHO05D002169 2.8e-19 99.4 111 45.0
THA.LOC104821346 Tarenaya hassleriana HOM05D002183 ORTHO05D002169 2.8e-19 99.4 111 46.8
TWI09G0419 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 8.2e-19 97.8 110 49.1
Lalb_Chr05g0212141 Lupinus albus HOM05D002183 ORTHO05D002169 1.4e-18 97.1 116 43.1
Thhalv10004534m.g Eutrema salsugineum HOM05D002183 ORTHO05D002169 3.1e-18 95.9 111 44.1
Gohir.A11G171600 Gossypium hirsutum HOM05D002183 ORTHO05D002169 3.1e-18 95.9 111 47.7
BcaB04g20128 Brassica carinata HOM05D002183 ORTHO05D002169 4.1e-18 95.5 179 35.8
THA.LOC104826480 Tarenaya hassleriana HOM05D002183 ORTHO05D002169 5.3e-18 95.1 111 42.3
Carub.0008s2846 Capsella rubella HOM05D002183 ORTHO05D002169 1.5e-17 93.6 132 39.4
Eucgr.I02297 Eucalyptus grandis HOM05D002183 ORTHO05D002169 1.5e-17 93.6 111 43.2
Cfa007035 Carpinus fangiana HOM05D002183 ORTHO05D002169 2.0e-17 93.2 111 46.8
CiPaw.08G125400 Carya illinoinensis HOM05D002183 ORTHO05D002169 2.6e-17 92.8 105 45.7
Aa31LG1G14540 Aethionema arabicum HOM05D002183 ORTHO05D002169 1.3e-16 90.5 111 39.6
VMungo1215G0472 Vigna mungo HOM05D002183 ORTHO05D002169 1.3e-16 90.5 110 42.7
Phvul.002G103800 Phaseolus vulgaris HOM05D002183 ORTHO05D002169 1.7e-16 90.1 110 42.7
AUR62026215 Chenopodium quinoa HOM05D002183 ORTHO05D002169 3.8e-16 89.0 111 44.1
Haze_03697 Corylus avellana HOM05D002183 ORTHO05D002169 3.8e-16 89.0 120 45.0
Lj2g0009962 Lotus japonicus HOM05D002183 ORTHO05D002169 3.8e-16 89.0 110 41.8
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 8.5e-16 87.8 72 59.7
Sed0023230 Sechium edule HOM05D002183 ORTHO05D002169 8.5e-16 87.8 109 45.9
PSO170G6420 Papaver somniferum HOM05D002183 ORTHO05D002169 2.5e-15 86.3 110 43.6
CARHR281710 Cardamine hirsuta HOM05D002183 ORTHO05D002169 3.2e-15 85.9 171 38.0
CsaV3_3G000470 Cucumis sativus L. HOM05D002183 ORTHO05D002169 5.5e-15 85.1 109 43.1
PSO210G3420 Papaver somniferum HOM05D002183 ORTHO05D002169 5.5e-15 85.1 110 43.6
Glyma.11G082000 Glycine max HOM05D002183 ORTHO05D002169 7.2e-15 84.7 110 41.8
MELO3C013740.2 Cucumis melo HOM05D002183 ORTHO05D002169 9.4e-15 84.3 109 43.1
AUR62026401 Chenopodium quinoa HOM05D002183 ORTHO05D002169 1.2e-14 84.0 102 44.1
TPR.G25132 Trifolium pratense HOM05D002183 ORTHO05D002169 1.2e-14 84.0 110 41.8
ClCG10G000440 Citrullus lanatus HOM05D002183 ORTHO05D002169 2.7e-14 82.8 109 45.0
EL10Ac6g13338 Beta vulgaris HOM05D002183 ORTHO05D002169 4.6e-14 82.0 75 53.3
Gohir.D11G178500 Gossypium hirsutum HOM05D002183 ORTHO05D002169 4.6e-14 82.0 102 45.1
Medtr5g023110 Medicago truncatula HOM05D002183 ORTHO05D002169 4.6e-14 82.0 110 42.7
Hund16624 Selenicereus undatus HOM05D002183 ORTHO05D002169 1.0e-13 80.9 76 51.3
Ah.03g134260 Amaranthus hybridus HOM05D002183 ORTHO05D002169 2.3e-13 79.7 80 51.2
Psat0s877g0040 Pisum sativum HOM05D002183 ORTHO05D002169 1.5e-12 77.0 110 40.9
Glyma.01G161700 Glycine max HOM05D002183 ORTHO05D002169 1.3e-11 73.9 97 42.3
CDE02G0651 Ceratophyllum demersum HOM05D002183 ORTHO05D002169 1.3e-08 63.9 67 53.7


User provided reference genes

Program Settings