Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.9e-182 642.5 345 100.0
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 4.6e-133 478.4 339 80.5
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.7e-80 303.1 290 65.2
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.7e-79 300.4 346 55.2
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.6e-51 206.8 299 49.8
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.4e-51 206.5 299 49.2
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 1.3e-47 194.5 299 46.5
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 5.1e-47 192.6 302 46.0
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 1.6e-45 187.6 258 48.1
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.8e-45 186.8 303 44.9
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 2.4e-44 183.7 231 51.9
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 4.0e-44 183.0 269 46.5
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 9.0e-44 181.8 301 45.5
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 2.0e-43 180.6 291 44.3
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 3.4e-43 179.9 294 45.2
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 7.6e-43 178.7 326 41.7
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 3.8e-42 176.4 312 41.7
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 4.9e-42 176.0 230 47.8
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.1e-41 174.9 250 46.8
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 1.9e-41 174.1 278 43.5
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 4.2e-41 172.9 281 42.0
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.1e-40 170.6 232 47.4
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 2.7e-40 170.2 233 49.4
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 7.8e-40 168.7 300 41.3
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 7.8e-40 168.7 246 44.3
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 7.8e-40 168.7 292 40.4
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 1.7e-39 167.5 231 47.2
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 2.3e-39 167.2 232 46.1
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 2.3e-39 167.2 350 38.3
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 3.9e-39 166.4 232 46.6
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 5.1e-39 166.0 233 48.9
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.5e-38 164.5 232 45.3
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 1.5e-38 164.5 298 42.3
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 1.9e-38 164.1 285 40.7
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.9e-38 164.1 305 39.7
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 2.5e-38 163.7 274 42.3
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 3.3e-38 163.3 304 38.8
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 3.3e-38 163.3 270 42.2
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.3e-38 163.3 286 42.0
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.3e-38 163.3 279 41.9
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 5.6e-38 162.5 244 43.0
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 5.6e-38 162.5 234 43.6
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 7.3e-38 162.2 230 45.2
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 9.6e-38 161.8 279 41.6
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 9.6e-38 161.8 291 43.0
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 9.6e-38 161.8 238 43.3
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.6e-37 161.0 286 40.2
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 2.1e-37 160.6 287 39.0
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 2.1e-37 160.6 297 40.7
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 2.1e-37 160.6 259 42.1
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 2.8e-37 160.2 297 40.7
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 3.6e-37 159.8 274 41.6
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.8e-37 159.5 279 41.6
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 6.2e-37 159.1 290 39.7
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 8.1e-37 158.7 232 47.8
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.1e-36 158.3 292 40.4
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 1.1e-36 158.3 314 38.9
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 1.8e-36 157.5 283 40.3
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 1.8e-36 157.5 283 40.3
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.1e-36 156.8 288 40.3
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 4.0e-36 156.4 287 40.4
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 4.0e-36 156.4 250 43.2
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 4.0e-36 156.4 290 42.1
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 4.0e-36 156.4 232 47.0
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 6.9e-36 155.6 288 39.6
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 9.0e-36 155.2 289 39.4
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 9.0e-36 155.2 307 39.1
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 2.6e-35 153.7 295 38.6
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.4e-35 153.3 232 43.5
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.4e-35 153.3 232 43.5
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 5.8e-35 152.5 235 44.3
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 7.6e-35 152.1 196 49.0
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 9.9e-35 151.8 229 44.5
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.3e-34 151.4 281 42.0
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 2.2e-34 150.6 129 62.8
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.9e-34 150.2 202 48.5
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 6.4e-34 149.1 297 38.0
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 1.1e-33 148.3 307 38.4
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 4.2e-33 146.4 290 37.2
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 4.2e-33 146.4 201 48.8
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 5.4e-33 146.0 230 44.3
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 7.1e-33 145.6 232 43.1
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 9.3e-33 145.2 307 38.1
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 1.6e-32 144.4 254 40.9
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 2.7e-32 143.7 233 42.5
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 7.9e-32 142.1 279 37.6
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.8e-31 141.0 272 39.3
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 2.3e-31 140.6 231 40.7
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 3.0e-31 140.2 236 41.9
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 3.9e-31 139.8 234 42.3
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 3.9e-31 139.8 233 40.3
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 1.9e-30 137.5 164 53.0
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 5.3e-28 129.4 231 39.0
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 9.0e-28 128.6 141 53.9
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 4.5e-27 126.3 228 39.0
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 1.3e-26 124.8 219 39.3
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 1.7e-26 124.4 289 36.7
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 1.7e-26 124.4 266 34.6
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.8e-26 123.2 198 46.0
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 8.4e-26 122.1 219 38.8
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 1.9e-25 120.9 198 42.9
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 6.0e-24 115.9 129 49.6
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 7.9e-24 115.5 240 38.8
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.3e-23 114.8 252 35.7
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 1.5e-22 111.3 200 39.5
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 5.6e-22 109.4 177 41.2
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 2.8e-21 107.1 99 54.5
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.0e-19 100.9 91 56.0
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 5.8e-19 99.4 191 37.2
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.3e-18 98.2 178 39.3
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 2.9e-18 97.1 270 33.0
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 7.1e-17 92.4 207 40.6
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 1.0e-15 88.6 229 30.6
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 6.9e-12 75.9 297 29.0
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.7e-10 71.2 291 27.1
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.2e-08 65.1 72 58.3
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 2.7e-08 63.9 55 69.1
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 6.1e-08 62.8 55 69.1
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.0e-07 62.0 56 66.1
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 1.4e-07 61.6 226 28.8


User provided reference genes

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