Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.5e-210 736.1 419 100.0
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.3e-187 659.1 420 93.1
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.3e-105 387.5 429 60.8
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.4e-99 367.5 451 59.2
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 4.5e-98 362.5 448 58.5
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.1e-83 312.8 444 46.8
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 8.5e-81 305.1 451 52.5
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.6e-79 299.7 429 49.0
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 3.3e-77 293.1 458 45.2
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 3.7e-76 289.7 438 45.2
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 5.5e-72 275.8 433 44.6
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 7.2e-72 275.4 446 43.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 9.4e-72 275.0 437 45.3
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 8.0e-71 271.9 455 42.4
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.2e-69 268.1 425 43.3
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.2e-69 268.1 431 46.2
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.0e-69 267.3 437 46.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.6e-69 266.9 443 41.3
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 5.7e-69 265.8 453 45.9
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 2.8e-68 263.5 441 47.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 6.3e-68 262.3 426 42.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.1e-67 261.5 439 46.5
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 1.4e-67 261.2 436 42.9
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 3.1e-67 260.0 433 42.5
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 4.1e-67 259.6 436 42.7
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 9.1e-67 258.5 427 44.7
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.2e-66 258.1 182 78.0
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.6e-66 257.7 444 42.6
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 4.5e-66 256.1 448 45.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 7.7e-66 255.4 450 40.9
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 7.7e-66 255.4 442 41.9
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.3e-65 254.6 425 43.8
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.3e-65 254.6 447 41.2
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 2.9e-65 253.4 435 43.9
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 6.5e-65 252.3 446 42.2
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.9e-64 250.8 431 42.5
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 5.5e-64 249.2 222 60.8
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 4.7e-63 246.1 434 43.1
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 2.3e-62 243.8 426 42.3
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.3e-62 243.8 425 42.6
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 2.3e-62 243.8 215 63.3
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 3.0e-62 243.4 422 41.7
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.0e-62 243.0 431 41.8
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 6.8e-62 242.3 445 40.2
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 2.0e-61 240.7 420 41.0
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 3.4e-61 240.0 430 40.2
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 5.7e-61 239.2 428 40.4
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 9.8e-61 238.4 418 40.9
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 9.8e-61 238.4 425 43.8
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 2.8e-60 236.9 450 44.7
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 4.9e-60 236.1 423 39.7
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 6.3e-60 235.7 434 38.9
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 2.4e-59 233.8 223 58.7
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.4e-59 232.6 220 56.8
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.8e-58 228.8 431 42.7
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.7e-57 227.6 425 39.8
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.9e-56 224.2 421 39.4
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 4.3e-56 223.0 416 40.4
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 5.6e-56 222.6 378 43.9
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-55 221.5 456 38.4
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.1e-55 220.7 257 51.0
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.8e-55 220.3 220 56.8
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.6e-55 219.9 429 42.4
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 6.1e-55 219.2 438 37.9
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 6.1e-55 219.2 222 55.4
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.0e-54 218.4 418 42.3
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.4e-54 218.0 208 56.7
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.3e-54 217.2 221 55.2
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 6.8e-54 215.7 431 39.4
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 8.9e-54 215.3 439 35.8
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.2e-53 214.9 441 37.2
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 3.4e-53 213.4 433 38.3
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 4.4e-53 213.0 202 56.4
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 7.5e-53 212.2 436 36.5
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.7e-52 211.1 448 40.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 4.9e-52 209.5 442 36.0
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.1e-51 208.4 626 35.3
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.9e-51 207.6 209 55.0
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 4.1e-51 206.5 422 37.0
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 7.8e-50 202.2 225 51.1
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.7e-49 201.1 444 37.2
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.0e-49 199.5 427 41.0
vmacro15912 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.9e-48 197.6 225 66.2
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 2.5e-48 197.2 423 38.1
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.2e-47 194.9 417 43.6
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.2e-47 194.9 212 51.4
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 3.6e-47 193.4 447 38.7
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.1e-46 191.8 441 36.7
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-45 188.0 227 46.7
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.4e-45 186.8 407 37.8
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 1.4e-43 181.4 427 36.1
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 1.2e-42 178.3 450 34.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.0e-42 176.0 431 36.2
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.5e-40 171.4 199 50.8
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 5.6e-40 169.5 347 36.3
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 8.1e-39 165.6 180 53.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.1e-38 163.7 212 47.2
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.0e-37 161.0 143 56.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 7.5e-37 159.1 214 45.3
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.7e-36 157.9 421 38.0
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 2.2e-36 157.5 440 33.4
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-34 151.8 421 38.2
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.6e-34 151.4 519 33.9
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 2.1e-34 151.0 421 38.0
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 3.9e-33 146.7 421 37.8
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 5.6e-32 142.9 215 40.0
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 3.4e-29 133.7 217 42.4
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 9.9e-29 132.1 239 35.6
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.2e-28 131.0 130 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 8.4e-28 129.0 196 39.8
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 9.2e-27 125.6 215 42.3
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.3e-25 120.9 339 37.2
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 6.6e-25 119.4 429 32.6
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 8.7e-25 119.0 138 44.9
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.1e-24 118.6 239 35.1
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 6.9e-22 109.4 128 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.5e-21 108.2 182 37.4
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.5e-21 108.2 224 37.5
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.6e-21 107.5 119 47.9
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.4e-21 106.7 82 68.3
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 8.4e-20 102.4 80 66.2
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 5.4e-19 99.8 99 53.5
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 9.3e-19 99.0 80 60.0
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.3e-16 89.4 148 39.9
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.1e-15 85.9 123 44.7
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 5.4e-11 73.2 294 30.3
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-10 72.0 184 31.0
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.8e-09 68.2 168 32.7
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 6.7e-09 66.2 167 31.7
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 1.5e-08 65.1 328 27.4
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.5e-08 65.1 142 35.2
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 7.4e-08 62.8 280 27.1
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.3e-07 62.0 53 58.5
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 3.7e-07 60.5 54 57.4
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 8.1e-07 59.3 56 50.0
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.4e-06 57.8 96 36.5
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 3.1e-06 57.4 94 36.2
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 5.3e-06 56.6 94 36.2
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 5.3e-06 56.6 94 36.2
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 6.9e-06 56.2 52 48.1
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 6.9e-06 56.2 310 29.7


User provided reference genes

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