Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 7.1e-43 176.8 85 100.0
RhsimUnG0142800 Rhododendron simsii HOM05D003235 ORTHO05D003863 7.1e-43 176.8 85 100.0
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 7.1e-43 176.8 85 100.0
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 3.5e-42 174.5 85 98.8
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 3.5e-42 174.5 85 98.8
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 3.5e-42 174.5 85 98.8
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 3.5e-42 174.5 85 98.8
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 6.0e-42 173.7 85 97.6
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 1.0e-41 172.9 85 97.6
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 1.3e-41 172.6 85 96.5
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 1.7e-41 172.2 85 97.6
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 2.3e-41 171.8 85 96.5
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 2.3e-41 171.8 85 96.5
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 3.9e-41 171.0 83 97.6
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 3.9e-41 171.0 85 96.5
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 3.9e-41 171.0 84 96.4
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 3.9e-41 171.0 84 96.4
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 3.9e-41 171.0 85 96.5
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 5.1e-41 170.6 85 95.3
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 5.1e-41 170.6 83 96.4
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 5.1e-41 170.6 85 96.5
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 6.6e-41 170.2 84 96.4
Oeu051847.1 Olea europaea HOM05D003235 ORTHO05D003863 6.6e-41 170.2 84 96.4
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 6.6e-41 170.2 84 96.4
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 6.6e-41 170.2 84 96.4
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 6.6e-41 170.2 85 95.3
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 6.6e-41 170.2 85 95.3
Actinidia26336 Actinidia chinensis HOM05D003235 ORTHO05D003863 8.7e-41 169.9 83 97.6
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 8.7e-41 169.9 85 95.3
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 8.7e-41 169.9 84 96.4
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 1.5e-40 169.1 84 96.4
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.5e-40 169.1 85 95.3
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 1.5e-40 169.1 85 95.3
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 2.5e-40 168.3 85 95.3
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 2.5e-40 168.3 84 95.2
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 2.5e-40 168.3 85 92.9
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 2.5e-40 168.3 85 95.3
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 2.5e-40 168.3 84 94.0
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 2.5e-40 168.3 84 94.0
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 2.5e-40 168.3 85 94.1
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 2.5e-40 168.3 84 95.2
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 2.5e-40 168.3 84 95.2
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 3.3e-40 167.9 84 95.2
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 3.3e-40 167.9 84 95.2
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 3.3e-40 167.9 84 94.0
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 3.3e-40 167.9 83 95.2
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 3.3e-40 167.9 84 96.4
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 3.3e-40 167.9 84 95.2
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 4.3e-40 167.5 84 95.2
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 4.3e-40 167.5 85 95.3
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 4.3e-40 167.5 85 94.1
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 7.3e-40 166.8 84 95.2
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 7.3e-40 166.8 85 94.1
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 7.3e-40 166.8 82 96.3
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 7.3e-40 166.8 82 95.1
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 7.3e-40 166.8 82 95.1
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 7.3e-40 166.8 82 95.1
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 9.6e-40 166.4 85 91.8
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 9.6e-40 166.4 85 91.8
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 9.6e-40 166.4 85 91.8
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 9.6e-40 166.4 85 91.8
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 9.6e-40 166.4 84 95.2
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.3e-39 166.0 85 92.9
MBI18_g41996_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 1.3e-39 166.0 85 92.9
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.6e-39 165.6 85 92.9
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 1.6e-39 165.6 84 95.2
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 1.6e-39 165.6 84 95.2
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 1.6e-39 165.6 84 95.2
Psat1g147840 Pisum sativum HOM05D003235 ORTHO05D003863 1.6e-39 165.6 83 95.2
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 2.1e-39 165.2 84 92.9
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.1e-39 165.2 85 92.9
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 2.1e-39 165.2 84 94.0
DCAR_015672 Daucus carota HOM05D003235 ORTHO05D003863 2.8e-39 164.9 84 92.9
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 2.8e-39 164.9 85 91.8
VMungo0251G3552 Vigna mungo HOM05D003235 ORTHO05D003863 2.8e-39 164.9 84 94.0
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 3.6e-39 164.5 85 92.9
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 3.6e-39 164.5 84 94.0
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 4.8e-39 164.1 85 91.8
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 4.8e-39 164.1 84 91.7
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.8e-39 164.1 85 90.6
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 4.8e-39 164.1 84 94.0
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 4.8e-39 164.1 84 92.9
Atru.chr5.3499 Acer truncatum HOM05D003235 ORTHO05D003863 6.2e-39 163.7 84 94.0
FAN08G2058 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.1e-38 162.9 85 90.6
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 1.1e-38 162.9 85 90.6
QL10p000641 Quercus lobata HOM05D003235 ORTHO05D003863 1.1e-38 162.9 83 91.6
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 1.4e-38 162.5 84 91.7
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.8e-38 162.2 84 92.9
Aqoxy2G01314 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 4.0e-38 161.0 85 90.6
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 4.0e-38 161.0 85 91.8
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 4.0e-38 161.0 83 91.6
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 6.9e-38 160.2 84 91.7
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 1.2e-37 159.5 85 90.6
FAN18G1267 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-37 159.5 85 90.6
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.2e-37 159.5 84 91.7
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 1.2e-37 159.5 84 91.7
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 1.5e-37 159.1 85 91.8
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 2.6e-37 158.3 85 87.1
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 3.4e-37 157.9 85 87.1
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 3.4e-37 157.9 85 89.4
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 4.5e-37 157.5 83 86.7
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 9.9e-37 156.4 84 86.9
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 1.3e-36 156.0 85 88.2
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 1.3e-36 156.0 85 88.2
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 1.3e-36 156.0 84 88.1
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 1.3e-36 156.0 85 88.2
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 1.7e-36 155.6 83 88.0
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 2.2e-36 155.2 85 85.9
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 2.9e-36 154.8 85 85.9
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 2.9e-36 154.8 85 85.9
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 2.9e-36 154.8 85 88.2
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 3.8e-36 154.5 85 85.9
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 3.8e-36 154.5 85 85.9
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 3.8e-36 154.5 85 85.9
BraA10t43862Z Brassica rapa HOM05D003235 ORTHO05D003863 3.8e-36 154.5 85 85.9
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 4.9e-36 154.1 85 84.7
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 6.4e-36 153.7 85 85.9
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 8.4e-36 153.3 85 84.7
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 8.4e-36 153.3 85 84.7
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 8.4e-36 153.3 84 86.9
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 8.4e-36 153.3 85 84.7
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 1.4e-35 152.5 85 84.7
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 1.4e-35 152.5 85 84.7
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 1.4e-35 152.5 85 84.7
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 1.4e-35 152.5 85 84.7
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 1.4e-35 152.5 85 84.7
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 1.4e-35 152.5 83 85.5
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 1.9e-35 152.1 84 88.1
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 1.9e-35 152.1 84 88.1
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.4e-35 151.8 96 76.0
ATR1159G019 Amborella trichopoda HOM05D003235 ORTHO05D003863 3.2e-35 151.4 84 82.1
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 3.2e-35 151.4 85 82.4
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 9.3e-35 149.8 85 84.7
HPP92_011716 Vanilla planifolia HOM05D003235 ORTHO05D003863 2.1e-34 148.7 85 83.5
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 6.0e-34 147.1 72 94.4
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 1.0e-33 146.4 84 82.1
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 1.3e-33 146.0 76 86.8
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 3.0e-33 144.8 85 80.0
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 3.0e-33 144.8 85 80.0
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 6.7e-33 143.7 81 81.5
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 8.7e-33 143.3 82 81.7
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 1.5e-32 142.5 68 95.6
Pp3c11_26030 Physcomitrium patens HOM05D003235 ORTHO05D003863 2.5e-32 141.7 81 77.8
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 3.3e-32 141.4 66 97.0
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 4.3e-32 141.0 85 78.8
Eucgr.G01836 Eucalyptus grandis HOM05D003235 ORTHO05D003863 7.4e-32 140.2 82 78.0
Mapoly0005s0123 Marchantia polymorpha HOM05D003235 ORTHO05D003863 9.6e-32 139.8 84 76.2
SHI05839 Sapria himalayana HOM05D003235 ORTHO05D003863 9.6e-32 139.8 69 89.9
PGSC0003DMG400018636 Solanum tuberosum HOM05D003235 ORTHO05D003863 9.6e-32 139.8 72 86.1
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 1.3e-31 139.4 81 80.2
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 1.3e-31 139.4 81 82.7
SMO164G0177 Selaginella moellendorffii HOM05D003235 ORTHO05D003863 1.1e-30 136.3 84 76.2
Phvul.002G178901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.4e-30 135.2 68 91.2
Phvul.002G192901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.2e-29 132.9 68 89.7
CBR_g30644 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-29 130.6 82 68.3
RcHm_v2.0_Chr7g0219331 Rosa chinensis HOM05D003235 ORTHO05D003863 1.7e-28 129.0 69 87.0
EL10Ac3g05050 Beta vulgaris HOM05D003235 ORTHO05D003863 8.4e-28 126.7 80 78.8
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 3.2e-27 124.8 76 78.9
AagrBONN_evm.TU.Sc2ySwM_344.5027 Anthoceros agrestis HOM05D003235 ORTHO05D003863 1.8e-25 119.0 69 76.8
Eucgr.G01837 Eucalyptus grandis HOM05D003235 ORTHO05D003863 5.1e-25 117.5 68 76.5
Phvul.002G192000 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 5.1e-25 117.5 68 80.9
EL10Ac3g05833 Beta vulgaris HOM05D003235 ORTHO05D003863 4.8e-23 110.9 60 85.0
MBI02_g46599_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 1.1e-22 109.8 52 94.2
Pp3c14_5980 Physcomitrium patens HOM05D003235 ORTHO05D003863 2.4e-22 108.6 72 72.2
EL10Ac3g05834 Beta vulgaris HOM05D003235 ORTHO05D003863 4.0e-22 107.8 60 83.3
MCO05G004 Micromonas commoda HOM05D003235 ORTHO05D003863 5.8e-21 104.0 83 57.8
Cc08_g00720 Coffea canephora HOM05D003235 ORTHO05D003863 1.9e-19 99.0 48 95.8
Phvul.002G192600 Phaseolus vulgaris HOM05D003235 ORTHO05D017489 1.5e-16 89.4 80 61.2
AL8G18960 Arabidopsis lyrata HOM05D003235 ORTHO05D015367 5.7e-16 87.4 47 78.7
AL6G10680 Arabidopsis lyrata HOM05D003235 ORTHO05D015367 7.4e-16 87.0 47 78.7
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 9.7e-16 86.7 84 56.0
Cre06.g273250 Chlamydomonas reinhardtii HOM05D003235 ORTHO05D003863 4.8e-15 84.3 80 51.2
PRCOL_00006733 Prasinoderma coloniale HOM05D003235 ORTHO05D003863 9.0e-14 80.1 81 49.4
vmacro02324 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 7.7e-13 77.0 85 51.8
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.9e-12 75.1 35 91.4
FAN13G0036 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.8e-12 74.7 36 88.9
Mapoly0113s0056 Marchantia polymorpha HOM05D003235 ORTHO05D003863 1.9e-11 72.4 36 88.9
HanXRQChr08g0236381 Helianthus annuus HOM05D003235 ORTHO05D003863 1.6e-10 69.3 33 90.9
SGA_v2.0_scaffold80G25821 Striga asiatica HOM05D003235 ORTHO05D003863 2.1e-10 68.9 46 69.6
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.0e-09 65.1 41 73.2
TPR.G40684 Trifolium pratense HOM05D003235 ORTHO05D003863 5.7e-08 60.8 35 77.1
AUR62027140 Chenopodium quinoa HOM05D003235 ORTHO05D003863 1.7e-07 59.3 36 72.2
RhsimUnG0171100 Rhododendron simsii HOM05D003235 ORTHO05D003863 2.8e-07 58.5 25 96.0


User provided reference genes

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