Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 5.1e-105 384.4 194 100.0
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.2e-98 363.2 194 94.8
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.3e-79 300.1 162 95.1
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.4e-70 270.0 182 76.9
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.5e-67 258.1 182 71.4
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.2e-55 219.5 183 65.0
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.1e-54 215.7 182 63.2
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 7.0e-54 214.5 184 62.0
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 7.0e-54 214.5 142 77.5
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 8.6e-52 207.6 182 63.2
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 9.5e-51 204.1 184 58.7
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 9.5e-51 204.1 184 59.8
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 3.6e-50 202.2 184 59.8
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.2e-48 197.2 184 57.1
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.9e-47 192.6 185 57.8
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 6.4e-47 191.4 142 72.5
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 6.4e-47 191.4 182 58.2
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.7e-45 186.0 184 56.5
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.5e-45 185.7 188 55.9
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.5e-45 185.7 188 55.9
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 3.5e-45 185.7 181 53.0
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 4.6e-45 185.3 182 58.8
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 3.0e-44 182.6 184 54.9
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.0e-44 182.6 182 56.6
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 3.9e-44 182.2 185 56.2
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.0e-44 181.8 184 53.8
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 8.6e-44 181.0 182 53.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 8.6e-44 181.0 185 55.7
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.1e-43 180.6 182 54.9
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-43 180.3 181 51.9
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.5e-43 180.3 185 56.2
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.5e-43 180.3 183 56.8
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.5e-43 179.5 182 56.6
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.5e-43 179.5 184 53.3
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.5e-43 179.5 184 52.2
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.5e-43 179.5 184 53.3
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 2.5e-43 179.5 182 52.7
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 7.3e-43 177.9 182 56.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 7.3e-43 177.9 182 56.0
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 7.3e-43 177.9 182 53.3
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 9.5e-43 177.6 184 54.3
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 9.5e-43 177.6 184 54.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 9.5e-43 177.6 184 53.3
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.6e-42 175.6 182 55.5
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 3.6e-42 175.6 185 55.7
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 4.7e-42 175.3 183 53.6
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 6.2e-42 174.9 184 53.3
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 8.0e-42 174.5 184 52.7
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 8.0e-42 174.5 184 52.7
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.0e-41 174.1 184 52.7
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.8e-41 173.3 185 52.4
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 2.3e-41 172.9 184 52.7
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.3e-41 172.9 191 51.8
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.3e-41 172.9 191 51.8
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.3e-41 172.9 181 51.4
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 3.1e-41 172.6 183 52.5
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 6.8e-41 171.4 183 52.5
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 8.9e-41 171.0 186 53.2
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 8.9e-41 171.0 191 49.2
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 8.9e-41 171.0 191 49.2
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.2e-40 170.6 184 51.6
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.2e-40 170.6 185 51.9
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.5e-40 170.2 184 51.6
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.5e-40 170.2 184 51.6
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.5e-40 170.2 179 52.0
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.0e-40 169.9 191 52.4
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.4e-40 169.1 187 50.3
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 4.4e-40 168.7 186 49.5
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 4.4e-40 168.7 181 51.9
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 5.8e-40 168.3 181 50.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 5.8e-40 168.3 191 48.7
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 9.8e-40 167.5 182 52.2
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.3e-39 167.2 185 52.4
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-39 166.8 184 51.6
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.2e-39 166.4 184 50.0
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.2e-39 166.4 182 51.1
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.9e-39 166.0 181 50.3
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 3.7e-39 165.6 181 49.7
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.7e-39 165.6 185 49.7
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 4.9e-39 165.2 181 51.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 4.9e-39 165.2 185 49.7
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 6.4e-39 164.9 181 50.3
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 8.3e-39 164.5 181 50.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.4e-38 163.7 181 51.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.9e-38 163.3 182 48.9
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.9e-38 163.3 181 50.8
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 4.1e-38 162.2 182 50.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 4.1e-38 162.2 182 53.3
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.4e-38 161.8 181 49.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 9.2e-38 161.0 181 49.7
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 9.2e-38 161.0 181 48.6
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 9.2e-38 161.0 181 49.2
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.6e-37 160.2 180 51.7
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 2.7e-37 159.5 181 49.2
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 7.8e-37 157.9 180 51.1
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.0e-36 157.5 182 49.5
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.3e-36 157.1 192 47.9
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.7e-36 156.8 183 45.9
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.3e-36 156.4 183 50.3
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.3e-36 156.4 181 50.8
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.0e-36 156.0 182 52.2
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 3.9e-36 155.6 183 45.9
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 5.0e-36 155.2 186 52.7
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 6.6e-36 154.8 194 48.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 6.6e-36 154.8 182 50.5
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 8.6e-36 154.5 181 48.1
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 8.6e-36 154.5 179 50.8
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.5e-35 153.7 185 51.4
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 5.6e-35 151.8 182 47.8
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.6e-35 151.8 160 56.2
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 7.3e-35 151.4 182 46.7
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 9.5e-35 151.0 179 51.4
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 9.5e-35 151.0 182 47.8
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 2.8e-34 149.4 182 46.2
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 3.6e-34 149.1 182 47.3
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 3.6e-34 149.1 190 48.4
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 3.6e-34 149.1 172 48.3
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 6.2e-34 148.3 183 47.0
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 8.1e-34 147.9 179 47.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.4e-33 147.1 181 47.5
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.4e-33 147.1 179 47.5
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.8e-33 146.7 183 45.9
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.3e-33 146.4 183 44.8
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.3e-33 146.4 182 50.5
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 3.1e-33 146.0 176 47.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 3.1e-33 146.0 182 46.2
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 5.2e-33 145.2 182 46.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 5.2e-33 145.2 182 45.6
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 5.2e-33 145.2 182 45.1
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.9e-31 139.4 155 52.3
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 4.9e-31 138.7 178 47.2
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 7.1e-30 134.8 199 42.7
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 3.5e-29 132.5 183 43.7
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 2.3e-28 129.8 144 51.4
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 5.1e-28 128.6 140 51.4
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.5e-27 126.3 222 37.4
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 3.3e-27 125.9 183 43.2
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.3e-27 124.8 143 49.0
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 9.9e-24 114.4 128 49.2
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.3e-23 114.0 181 40.3
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 2.2e-23 113.2 159 47.8
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.4e-22 110.5 142 44.4
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.2e-22 109.4 161 40.4
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 4.1e-22 109.0 227 34.4
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 4.6e-21 105.5 204 37.7
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.0e-20 104.4 136 43.4
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.9e-20 102.4 187 39.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.6e-19 98.6 101 53.5
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 7.3e-19 98.2 147 39.5
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 6.2e-18 95.1 142 40.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 9.9e-16 87.8 136 41.9
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.2e-15 86.7 107 45.8
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 2.9e-15 86.3 74 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 3.8e-15 85.9 166 35.5
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 4.2e-14 82.4 139 38.1
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.7e-12 77.0 179 35.2
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.5e-11 73.9 175 30.9
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 9.9e-08 61.2 148 30.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.9e-07 59.7 103 35.9
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 6.4e-07 58.5 82 36.6
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 3.2e-06 56.2 87 43.7
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 7.1e-06 55.1 151 31.8


User provided reference genes

Program Settings