Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 6.2e-188 660.6 323 100.0
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 4.2e-144 515.0 346 77.7
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.7e-113 413.3 284 72.9
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.2e-113 412.9 284 72.5
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.0e-106 389.8 210 90.5
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.6e-98 363.6 229 75.1
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 8.0e-95 351.3 230 72.2
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.0e-94 350.9 230 71.3
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.2e-93 347.4 248 68.5
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 7.5e-93 344.7 312 57.7
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.7e-92 343.6 230 70.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.2e-92 343.2 229 72.5
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 4.8e-92 342.0 284 60.9
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.3e-92 341.3 249 66.7
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 8.3e-92 341.3 230 70.0
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.1e-91 339.0 229 71.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.2e-90 337.4 230 69.6
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 2.7e-90 336.3 229 70.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.9e-89 332.8 229 69.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 5.0e-89 332.0 249 65.9
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 3.2e-88 329.3 230 67.4
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 7.2e-88 328.2 284 57.0
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 7.2e-88 328.2 233 67.0
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.2e-87 327.4 230 69.1
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.8e-87 326.2 284 57.7
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 5.2e-86 322.0 229 67.2
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 5.7e-85 318.5 233 64.8
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 9.8e-85 317.8 230 63.5
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.7e-84 317.0 237 64.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.9e-84 315.5 284 55.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.1e-83 314.3 229 65.9
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.1e-83 312.8 307 54.1
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 4.1e-83 312.4 229 64.6
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.0e-82 310.1 229 65.9
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.0e-82 310.1 285 55.1
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 7.8e-82 308.1 286 56.3
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.0e-81 307.8 229 62.9
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.5e-80 303.9 229 64.6
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.1e-79 300.1 243 60.5
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.1e-79 300.1 229 63.3
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.8e-78 297.0 223 60.1
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.0e-78 296.2 226 58.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.0e-77 293.5 230 60.4
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 4.4e-77 292.4 248 57.7
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.7e-77 292.0 229 57.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 9.8e-77 291.2 287 53.0
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 2.2e-76 290.0 229 57.6
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.4e-75 286.6 229 57.6
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 8.6e-73 278.1 230 56.1
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 2.5e-72 276.6 215 63.3
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.3e-72 275.8 284 51.8
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 1.2e-71 274.2 209 62.2
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.6e-71 273.9 301 50.5
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 3.6e-71 272.7 209 63.2
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.3e-70 270.0 286 48.6
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 2.3e-70 270.0 279 49.1
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 5.8e-69 265.4 227 59.0
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.9e-67 260.4 305 46.9
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 7.0e-67 258.5 243 55.6
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 3.5e-66 256.1 229 57.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.8e-66 255.0 284 48.2
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.3e-65 254.2 209 55.0
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 8.6e-65 251.5 211 52.6
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.1e-62 244.6 211 53.1
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-62 244.6 211 53.1
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.1e-62 244.6 211 53.1
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.8e-62 243.8 209 57.4
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-61 240.4 210 53.3
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.0e-61 240.4 285 47.7
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 5.8e-61 238.8 328 43.3
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 9.9e-61 238.0 209 56.9
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 4.7e-55 219.2 232 47.8
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 8.1e-55 218.4 182 65.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.4e-54 217.6 259 46.3
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.9e-51 207.2 210 47.6
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 3.5e-50 203.0 240 44.2
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.5e-48 197.6 127 80.3
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 3.4e-45 186.4 132 71.2
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 3.2e-43 179.9 127 67.7
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.6e-42 177.6 229 41.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.1e-42 177.2 127 69.3
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.0e-41 173.3 157 59.9
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.1e-40 171.4 125 66.4
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 1.5e-40 171.0 126 67.5
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 7.3e-40 168.7 127 63.8
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 1.3e-39 167.9 264 39.0
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 3.1e-38 163.3 127 63.0
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 3.8e-36 156.4 128 59.4
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.4e-35 153.7 112 71.4
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 7.1e-35 152.1 127 54.3
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 9.3e-35 151.8 211 42.2
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 3.5e-34 149.8 183 48.1
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.0e-33 148.3 209 42.1
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 5.1e-33 146.0 129 55.8
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 5.6e-32 142.5 109 68.8
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 5.3e-30 136.0 98 71.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.3e-28 131.3 163 49.7
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.7e-28 131.0 163 49.7
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.9e-28 130.2 96 68.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.9e-28 129.4 84 78.6
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 6.4e-28 129.0 95 67.4
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 8.4e-28 128.6 95 66.3
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 8.4e-28 128.6 151 52.3
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.1e-27 128.3 167 45.5
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.4e-27 127.9 72 75.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.9e-27 127.5 95 67.4
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 2.4e-27 127.1 95 66.3
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 2.4e-27 127.1 95 66.3
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.4e-27 127.1 95 67.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 3.2e-27 126.7 102 62.7
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 9.3e-27 125.2 95 65.3
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.2e-26 124.8 103 62.1
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.6e-26 124.4 95 65.3
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.1e-26 124.0 95 63.2
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.0e-25 121.7 84 73.8
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 6.7e-25 119.0 135 48.9
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 8.7e-25 118.6 85 69.4
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 8.7e-25 118.6 95 62.1
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.5e-24 117.9 95 60.0
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.9e-24 117.5 95 61.1
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 9.6e-24 115.2 95 61.1
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.3e-23 114.8 63 71.4
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.1e-23 114.0 95 60.0
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-22 111.3 88 68.2
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 4.0e-22 109.8 84 66.7
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 4.0e-22 109.8 95 58.9
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 9.0e-22 108.6 147 48.3
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.6e-21 107.1 95 57.9
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 1.1e-19 101.7 124 46.0
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.5e-19 100.5 134 45.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 9.7e-16 88.6 183 37.2
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 5.9e-13 79.3 86 41.9
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 1.0e-12 78.6 120 39.2
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.0e-12 78.6 45 88.9
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.1e-11 75.1 44 84.1
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.4e-11 74.7 67 58.2
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 2.1e-10 70.9 116 37.9
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 6.1e-10 69.3 69 58.0
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.9e-10 68.9 101 39.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.3e-09 67.4 102 35.3
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 6.7e-09 65.9 102 33.3
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 3.3e-08 63.5 83 42.2
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.1e-06 58.5 85 35.3


User provided reference genes

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