Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.4e-50 200.3 105 100.0
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.0e-35 153.3 84 92.9
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 7.4e-34 147.1 84 86.9
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.3e-33 144.1 84 84.5
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.3e-30 136.3 79 84.8
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.2e-30 135.6 100 72.0
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 3.8e-30 134.8 84 79.8
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 5.0e-30 134.4 84 82.1
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 6.5e-30 134.0 84 79.8
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.9e-29 132.5 84 78.6
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.9e-29 132.5 84 78.6
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.9e-29 132.5 84 78.6
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.5e-29 132.1 84 81.0
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.5e-29 132.1 84 81.0
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 4.2e-29 131.3 84 76.2
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 4.2e-29 131.3 84 76.2
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 5.5e-29 131.0 84 78.6
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.2e-29 130.6 85 80.0
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 1.2e-28 129.8 84 77.4
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.7e-28 128.6 84 75.0
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 6.1e-28 127.5 84 73.8
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 8.0e-28 127.1 84 76.2
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 8.0e-28 127.1 84 73.8
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.0e-27 126.7 84 72.6
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.4e-27 126.3 84 73.8
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.4e-27 126.3 84 73.8
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.8e-27 125.9 84 71.4
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.8e-27 125.9 84 71.4
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.8e-27 125.9 84 75.0
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.3e-27 125.6 82 73.2
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.3e-27 125.6 84 72.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.0e-27 125.2 84 71.4
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.0e-27 125.2 84 72.6
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 3.0e-27 125.2 84 73.8
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.0e-27 125.2 84 70.2
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 4.0e-27 124.8 84 75.0
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 4.0e-27 124.8 84 70.2
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 5.2e-27 124.4 84 70.2
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 6.7e-27 124.0 84 70.2
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 6.7e-27 124.0 84 72.6
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 6.7e-27 124.0 84 70.2
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 8.8e-27 123.6 84 73.8
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.1e-26 123.2 82 70.7
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.5e-26 122.9 82 70.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.5e-26 122.9 84 73.8
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.5e-26 122.9 84 72.6
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.5e-26 122.9 84 69.0
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.0e-26 122.5 84 70.2
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.0e-26 122.5 84 70.2
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.0e-26 122.5 84 71.4
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 3.3e-26 121.7 84 70.2
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.4e-26 121.3 84 72.6
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 4.4e-26 121.3 84 71.4
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 4.4e-26 121.3 84 70.2
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 4.4e-26 121.3 82 72.0
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 5.7e-26 120.9 84 66.7
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 7.5e-26 120.6 84 72.6
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 9.7e-26 120.2 84 71.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 9.7e-26 120.2 84 71.4
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.3e-25 119.8 84 69.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.7e-25 119.4 104 61.5
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 2.8e-25 118.6 84 67.9
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.8e-25 118.6 84 69.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.8e-25 118.6 84 70.2
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 2.8e-25 118.6 84 69.0
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 2.8e-25 118.6 84 67.9
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.8e-25 118.6 84 67.9
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.7e-25 118.2 84 67.9
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 4.8e-25 117.9 84 67.9
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 4.8e-25 117.9 84 67.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 4.8e-25 117.9 84 69.0
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.8e-25 117.9 84 67.9
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 4.8e-25 117.9 84 67.9
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 4.8e-25 117.9 84 70.2
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 6.3e-25 117.5 84 69.0
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 6.3e-25 117.5 84 67.9
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 8.2e-25 117.1 84 69.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.1e-24 116.7 82 67.1
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.1e-24 116.7 82 69.5
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.1e-24 116.7 103 58.3
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.1e-24 116.7 84 66.7
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.1e-24 116.7 84 67.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.4e-24 116.3 84 70.2
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.8e-24 115.9 84 66.7
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.8e-24 115.9 84 66.7
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.8e-24 115.9 117 55.6
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 2.4e-24 115.5 84 70.2
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 2.4e-24 115.5 82 72.0
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 3.1e-24 115.2 84 66.7
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.1e-24 115.2 84 69.0
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 4.1e-24 114.8 84 66.7
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 4.1e-24 114.8 84 67.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.1e-24 114.8 85 64.7
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 5.3e-24 114.4 84 65.5
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 7.0e-24 114.0 84 66.7
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 7.0e-24 114.0 84 66.7
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 7.0e-24 114.0 84 66.7
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 7.0e-24 114.0 84 66.7
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 9.1e-24 113.6 84 64.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 9.1e-24 113.6 84 64.3
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.1e-24 113.6 84 64.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.1e-24 113.6 84 64.3
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.1e-24 113.6 84 64.3
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.1e-24 113.6 84 64.3
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.1e-24 113.6 84 64.3
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.6e-23 112.8 84 67.9
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.6e-23 112.8 84 65.5
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.6e-23 112.8 84 67.9
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.6e-23 112.8 84 65.5
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 2.0e-23 112.5 86 62.8
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.5e-23 111.7 84 64.3
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.5e-23 111.3 85 64.7
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 4.5e-23 111.3 84 66.7
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 5.9e-23 110.9 84 61.9
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 5.9e-23 110.9 100 59.0
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.0e-22 110.2 84 65.5
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 1.3e-22 109.8 84 64.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.2e-22 109.0 86 61.6
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 3.8e-22 108.2 74 70.3
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 3.8e-22 108.2 83 66.3
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.8e-22 108.2 84 64.3
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 6.5e-22 107.5 72 72.2
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 8.5e-22 107.1 81 64.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.5e-21 105.5 84 60.7
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.5e-21 105.5 73 69.9
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 4.2e-21 104.8 81 60.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 5.5e-21 104.4 84 59.5
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 5.5e-21 104.4 84 59.5
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 9.4e-21 103.6 80 66.2
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 2.7e-20 102.1 86 59.3
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 3.6e-20 101.7 73 69.9
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 8.0e-20 100.5 84 56.0
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 8.0e-20 100.5 84 56.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 8.0e-20 100.5 84 56.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-19 99.8 84 56.0
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.4e-19 99.8 82 56.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-19 99.0 84 56.0
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.3e-19 99.0 84 56.0
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 5.2e-19 97.8 84 54.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.5e-18 96.3 82 56.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.5e-18 96.3 83 60.2
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 5.7e-18 94.4 116 44.8
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 9.8e-18 93.6 91 51.6
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.3e-17 93.2 82 53.7
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 7.0e-16 87.4 78 51.3
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 2.7e-15 85.5 49 77.6
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 3.5e-15 85.1 73 54.8
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 5.9e-15 84.3 48 81.2
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 7.7e-15 84.0 85 48.2
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-14 83.6 73 56.2
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 2.2e-14 82.4 68 55.9
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.2e-14 82.4 49 75.5
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 2.9e-14 82.0 73 53.4
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 3.8e-14 81.6 48 77.1
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 5.0e-14 81.3 112 42.0
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 5.5e-13 77.8 80 48.8
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 3.6e-12 75.1 51 74.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.0e-11 73.6 59 59.3
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 6.8e-11 70.9 72 56.9
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 2.0e-10 69.3 48 66.7
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 4.4e-10 68.2 51 54.9
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 4.4e-10 68.2 51 54.9
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.8e-10 67.0 101 38.6
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 4.9e-09 64.7 38 76.3
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-08 63.5 65 47.7


User provided reference genes

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