Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 0.0e+00 1600.5 855 100.0
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 0.0e+00 1526.9 857 95.9
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 3.3e-257 892.1 648 80.2
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 9.5e-204 714.5 950 52.9
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 3.0e-173 613.2 976 46.3
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 3.0e-165 586.6 981 45.4
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 3.3e-164 583.2 922 46.1
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 6.2e-163 578.9 922 46.0
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 4.9e-160 569.3 974 45.2
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 1.4e-159 567.8 991 44.8
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 6.1e-142 509.2 836 46.2
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.3e-140 503.4 918 41.4
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.2e-137 495.0 931 41.4
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 3.2e-135 486.9 956 43.3
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.1e-130 469.9 835 44.7
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 2.2e-128 464.2 1025 39.5
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 7.4e-124 449.1 854 40.9
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 8.2e-123 445.7 993 38.8
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.4e-122 444.9 842 39.7
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.8e-122 444.5 807 44.0
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.7e-120 438.0 784 44.3
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 8.5e-120 435.6 1047 36.4
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 4.7e-118 429.9 798 42.6
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.2e-116 425.2 959 38.8
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.3e-115 421.8 801 42.6
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 6.3e-115 419.5 740 44.9
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 8.3e-115 419.1 977 36.3
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.4e-114 417.5 935 38.9
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 5.4e-114 416.4 898 39.0
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 2.0e-113 414.5 978 36.6
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 7.7e-113 412.5 781 43.3
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 1.1e-111 408.7 785 41.4
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 2.1e-110 404.4 926 38.7
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 6.1e-110 402.9 813 40.2
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.4e-109 401.7 887 39.7
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 4.0e-109 400.2 966 36.2
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.5e-108 398.3 823 41.1
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.4e-108 396.7 721 44.5
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 2.2e-107 394.4 946 36.3
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.8e-106 391.3 1081 34.6
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 5.4e-106 389.8 896 37.3
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.6e-105 388.3 675 44.7
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.5e-103 381.7 862 38.1
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 2.5e-103 380.9 682 44.7
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 5.6e-103 379.8 796 41.0
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 3.6e-102 377.1 715 43.2
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 1.4e-101 375.2 717 43.5
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.0e-101 374.0 902 38.2
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 3.0e-101 374.0 796 39.8
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 6.8e-101 372.9 796 40.8
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 7.5e-100 369.4 814 40.4
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 2.9e-99 367.5 874 39.6
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 3.2e-98 364.0 811 40.6
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 5.4e-98 363.2 942 36.6
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 1.2e-97 362.1 768 39.1
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 1.6e-97 361.7 799 39.0
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 2.0e-97 361.3 699 41.6
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 3.5e-97 360.5 940 37.3
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 7.8e-97 359.4 943 36.3
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 5.0e-96 356.7 599 43.4
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.5e-95 355.1 915 35.4
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.5e-95 354.4 903 35.9
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.6e-94 350.5 931 34.5
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 4.4e-92 343.6 685 42.2
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 5.8e-92 343.2 527 46.7
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.0e-89 334.7 414 52.2
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 7.3e-87 326.2 951 33.0
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 7.3e-87 326.2 682 41.2
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 1.6e-86 325.1 774 37.7
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 4.7e-86 323.6 675 40.4
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 2.3e-85 321.2 947 31.9
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.2e-84 318.9 484 46.1
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 3.4e-84 317.4 443 50.1
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.9e-82 311.6 748 38.1
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 2.4e-82 311.2 815 34.4
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 9.2e-82 309.3 467 45.2
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.2e-81 308.9 829 33.9
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.1e-81 308.1 780 37.4
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 5.1e-80 303.5 938 32.7
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 8.6e-80 302.8 815 34.2
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 4.3e-79 300.4 467 46.3
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.2e-78 298.9 780 35.3
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 1.1e-77 295.8 707 39.2
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.4e-77 295.4 855 32.3
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.8e-77 295.0 805 36.3
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.2e-76 292.4 698 35.5
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 2.6e-76 291.2 817 33.3
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 2.6e-76 291.2 694 36.7
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 9.9e-76 289.3 386 49.7
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.7e-75 288.5 966 30.2
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 9.2e-74 282.7 787 33.2
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 3.4e-68 264.2 842 35.9
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 2.2e-67 261.5 455 42.2
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 7.1e-66 256.5 806 33.9
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 2.1e-57 228.4 581 38.0
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.1e-55 222.6 655 36.0
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 2.1e-49 201.8 340 44.7
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 3.3e-39 167.9 578 30.3
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 3.3e-39 167.9 578 30.3
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 6.5e-35 153.7 298 43.0
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.3e-30 139.4 198 53.0
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-27 129.4 547 28.0
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 3.8e-27 127.9 889 26.3
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 6.5e-27 127.1 123 58.5
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 6.1e-25 120.6 214 43.0
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 7.4e-23 113.6 336 34.8
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.1e-21 107.8 265 37.4
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.5e-20 105.9 95 62.1
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 3.4e-20 104.8 84 63.1
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 3.4e-20 104.8 268 34.0
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.7e-19 102.4 124 53.2
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 6.5e-19 100.5 130 52.3
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.2e-17 96.3 130 50.0
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 2.1e-17 95.5 376 28.5
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.1e-13 81.3 365 31.8
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.3e-11 76.3 66 69.7
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 2.2e-11 75.5 109 44.0
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 1.5e-10 72.8 115 43.5
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 4.2e-10 71.2 164 34.8
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 4.4e-07 61.2 56 55.4


User provided reference genes

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