Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 9.7e-106 386.7 183 100.0
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 9.4e-101 370.2 199 89.9
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 7.5e-74 280.8 194 72.2
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 2.3e-70 269.2 191 70.7
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 5.0e-70 268.1 197 69.5
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.5e-66 256.5 194 68.6
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 7.5e-66 254.2 194 65.5
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 1.3e-65 253.4 194 64.9
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 9.2e-64 247.3 193 63.7
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.2e-63 246.9 198 65.7
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 3.9e-62 241.9 197 63.5
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.0e-62 241.5 200 62.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 2.5e-61 239.2 194 60.8
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 9.5e-61 237.3 200 60.0
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.6e-60 236.5 192 61.5
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 2.1e-60 236.1 192 62.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.1e-59 233.8 197 61.4
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.4e-59 233.4 194 58.8
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 2.3e-59 232.6 199 61.8
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 2.6e-58 229.2 266 48.9
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 3.4e-58 228.8 197 60.9
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 4.4e-58 228.4 193 61.7
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 7.5e-58 227.6 212 55.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.3e-57 226.9 194 59.3
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.2e-57 226.1 189 59.8
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.2e-57 226.1 193 60.1
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 4.9e-57 224.9 198 58.6
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.3e-57 224.2 188 60.1
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.3e-57 224.2 188 60.1
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.1e-56 223.8 199 59.8
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 3.2e-56 222.2 192 59.4
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 7.1e-56 221.1 207 56.5
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 9.2e-56 220.7 192 57.3
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.2e-55 220.3 181 61.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.2e-55 220.3 196 58.2
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 1.6e-55 219.9 200 58.5
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 2.1e-55 219.5 212 56.1
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.1e-55 219.5 194 60.3
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 2.7e-55 219.2 192 56.2
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 2.7e-55 219.2 193 58.5
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 3.5e-55 218.8 196 56.1
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 4.6e-55 218.4 197 57.9
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 4.6e-55 218.4 194 57.7
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 4.6e-55 218.4 196 58.2
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 4.6e-55 218.4 205 54.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 7.8e-55 217.6 205 54.6
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.0e-54 217.2 194 57.2
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.3e-54 216.9 202 55.9
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.7e-54 216.5 194 58.8
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.1e-53 213.8 219 53.9
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.5e-53 212.6 228 50.9
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 3.3e-53 212.2 198 55.1
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 4.3e-53 211.8 228 50.9
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 4.3e-53 211.8 193 56.0
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 7.3e-53 211.1 193 55.4
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 1.6e-52 209.9 194 54.6
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 3.6e-52 208.8 194 57.7
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 4.7e-52 208.4 186 55.9
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 6.2e-52 208.0 212 53.8
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 6.2e-52 208.0 176 58.5
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 6.2e-52 208.0 202 53.0
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 8.1e-52 207.6 200 57.0
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.1e-51 207.2 193 53.4
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 2.4e-51 206.1 192 54.7
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 3.1e-51 205.7 254 45.7
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 4.0e-51 205.3 124 79.8
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 4.0e-51 205.3 192 53.6
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 5.2e-51 204.9 194 57.2
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.0e-50 203.0 195 54.9
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 4.4e-50 201.8 194 55.7
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 5.8e-50 201.4 180 58.3
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.6e-50 201.1 189 56.1
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 7.6e-50 201.1 190 51.1
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.9e-49 199.1 195 51.3
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 2.9e-49 199.1 190 52.1
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 2.9e-49 199.1 136 68.4
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 3.8e-49 198.7 194 54.6
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 8.4e-49 197.6 199 52.8
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.1e-48 197.2 192 54.7
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.4e-48 196.8 131 71.0
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 2.4e-48 196.1 202 54.5
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 7.1e-48 194.5 138 65.2
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.6e-47 193.4 193 48.2
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.1e-47 193.0 193 48.2
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 3.5e-47 192.2 124 74.2
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 7.8e-47 191.0 184 55.4
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 3.0e-46 189.1 164 57.9
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.5e-45 186.0 200 51.5
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 5.6e-45 184.9 119 71.4
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 3.6e-44 182.2 154 57.8
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 3.6e-44 182.2 190 50.5
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 8.1e-44 181.0 122 66.4
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.1e-43 180.6 202 50.0
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.8e-43 179.9 120 70.0
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 2.4e-43 179.5 119 70.6
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.7e-41 173.3 127 61.4
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.9e-40 169.9 146 58.9
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 1.0e-38 164.1 83 88.0
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.1e-37 160.6 125 64.0
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 4.3e-37 158.7 256 40.2
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 5.6e-37 158.3 165 51.5
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 7.3e-37 157.9 120 58.3
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 2.1e-36 156.4 167 50.3
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 3.1e-35 152.5 135 55.6
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.2e-34 150.6 114 60.5
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 2.0e-34 149.8 126 54.0
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 2.1e-31 139.8 113 52.2
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 6.7e-30 134.8 167 44.9
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 6.7e-30 134.8 127 55.1
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 7.4e-29 131.3 202 38.6
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.3e-28 130.6 95 64.2
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 2.1e-28 129.8 113 50.4
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.1e-28 129.8 125 50.4
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 3.8e-25 119.0 57 86.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 6.4e-25 118.2 57 89.5
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 1.1e-24 117.5 137 51.1
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 3.5e-23 112.5 135 48.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 1.0e-22 110.9 265 33.6
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 8.7e-22 107.8 127 42.5
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 4.3e-21 105.5 139 42.4
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 8.2e-20 101.3 106 42.5
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.5e-18 97.1 158 39.9
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.0e-18 96.7 47 87.2
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 3.2e-16 89.4 106 40.6
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 7.1e-16 88.2 95 42.1
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.6e-15 87.0 100 36.0
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 4.6e-15 85.5 96 42.7
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 5.7e-13 78.6 104 40.4
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 7.4e-13 78.2 111 40.5
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 9.7e-13 77.8 93 38.7
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 3.7e-12 75.9 98 46.9
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 6.3e-12 75.1 101 44.6
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 6.3e-12 75.1 103 42.7
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 4.1e-11 72.4 34 85.3
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 4.1e-11 72.4 34 85.3
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 3.8e-09 65.9 148 30.4
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 5.0e-09 65.5 99 36.4
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 8.5e-09 64.7 96 41.7
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 3.9e-06 55.8 28 82.1


User provided reference genes

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