Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 3.2e-22 107.8 68 100.0
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.9e-15 84.7 54 81.5
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 3.6e-13 77.8 53 73.6
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 8.0e-13 76.6 53 75.5
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.3e-12 75.1 53 71.7
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 2.3e-12 75.1 53 67.9
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 4.0e-12 74.3 53 69.8
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 6.8e-12 73.6 53 67.9
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 8.8e-12 73.2 53 71.7
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.5e-11 72.4 53 73.6
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 2.0e-11 72.0 53 71.7
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.6e-11 71.6 53 71.7
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.7e-11 70.5 53 66.0
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 5.7e-11 70.5 53 69.8
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.7e-10 68.9 53 64.2
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.7e-10 68.9 53 66.0
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.2e-10 68.6 53 62.3
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.3e-10 66.6 53 62.3
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.1e-09 66.2 53 62.3
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 1.4e-09 65.9 51 68.6
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.4e-09 65.9 53 66.0
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.8e-09 65.5 53 58.5
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.8e-09 65.5 46 71.7
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 2.4e-09 65.1 46 69.6
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 2.4e-09 65.1 53 58.5
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.4e-09 63.9 53 58.5
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.4e-09 63.9 53 58.5
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 9.1e-09 63.2 39 76.9
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 9.1e-09 63.2 50 64.0
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.2e-08 62.8 53 58.5
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.2e-08 62.8 38 81.6
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.2e-08 62.8 40 80.0
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 1.6e-08 62.4 53 58.5
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 1.6e-08 62.4 45 68.9
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.6e-08 62.4 40 75.0
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 2.0e-08 62.0 53 58.5
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 2.0e-08 62.0 49 67.3
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.5e-08 61.2 44 70.5
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 4.5e-08 60.8 53 56.6
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 5.9e-08 60.5 46 67.4
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 7.7e-08 60.1 42 66.7
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.7e-07 58.9 42 69.0
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.7e-07 58.9 42 69.0
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.7e-07 58.9 53 54.7
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.7e-07 58.9 38 73.7
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 2.9e-07 58.2 53 58.5
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 2.9e-07 58.2 50 60.0
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 2.9e-07 58.2 38 76.3
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 2.9e-07 58.2 38 76.3
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 3.8e-07 57.8 38 76.3
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 5.0e-07 57.4 38 73.7
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 5.0e-07 57.4 54 50.0
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 6.6e-07 57.0 44 65.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.6e-07 57.0 48 56.2
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 8.6e-07 56.6 42 61.9
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 8.6e-07 56.6 38 71.1
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 8.6e-07 56.6 55 60.0
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 8.6e-07 56.6 38 76.3
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 8.6e-07 56.6 50 58.0
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 8.6e-07 56.6 38 73.7
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.1e-06 56.2 42 61.9
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.5e-06 55.8 38 73.7
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 1.5e-06 55.8 38 68.4
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.5e-06 55.8 44 65.9
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.5e-06 55.8 53 60.4
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 2.5e-06 55.1 48 56.2
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.3e-06 54.7 42 66.7
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 3.3e-06 54.7 46 65.2
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 4.2e-06 54.3 53 52.8
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 4.2e-06 54.3 53 54.7
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.5e-06 53.9 38 71.1
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 5.5e-06 53.9 40 60.0
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 7.2e-06 53.5 38 68.4
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 7.2e-06 53.5 53 54.7
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 7.2e-06 53.5 51 51.0
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 7.2e-06 53.5 53 56.6
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 9.5e-06 53.1 55 54.5
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 9.5e-06 53.1 56 53.6
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 9.5e-06 53.1 53 54.7


User provided reference genes

Program Settings