Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 2.0e-178 629.0 318 100.0
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.1e-109 400.6 321 71.3
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 9.6e-93 344.4 318 62.6
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.5e-85 319.7 318 58.2
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 5.1e-78 295.4 318 56.0
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 1.5e-77 293.9 318 55.7
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 5.7e-77 292.0 318 53.8
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.3e-76 290.8 318 52.8
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 2.8e-76 289.7 318 52.8
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 6.3e-76 288.5 338 53.6
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 6.3e-76 288.5 318 53.5
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 6.3e-76 288.5 318 52.2
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.1e-75 286.2 318 52.2
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 4.1e-75 285.8 318 52.8
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 9.0e-75 284.6 318 51.9
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 2.6e-74 283.1 318 52.5
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 2.6e-74 283.1 318 52.5
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 4.5e-74 282.3 318 52.8
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 5.9e-74 282.0 318 50.3
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 7.7e-74 281.6 318 51.9
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 1.3e-73 280.8 318 50.6
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 2.2e-73 280.0 318 52.2
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 2.2e-73 280.0 327 50.5
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 3.8e-73 279.3 318 51.9
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 6.5e-73 278.5 318 50.3
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 8.5e-73 278.1 322 52.2
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 1.1e-72 277.7 318 51.3
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.4e-72 277.3 318 51.9
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.9e-72 276.9 318 50.9
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 4.2e-72 275.8 318 50.3
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 7.2e-72 275.0 320 51.9
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.2e-71 274.2 318 51.6
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 2.1e-71 273.5 318 51.6
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.1e-71 273.5 318 52.8
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 3.6e-71 272.7 318 50.0
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 7.9e-71 271.6 318 51.3
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.0e-70 271.2 318 50.0
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.4e-70 270.8 318 50.3
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.4e-70 270.8 317 52.1
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 2.3e-70 270.0 318 50.6
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 8.8e-70 268.1 318 50.0
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 8.8e-70 268.1 318 50.3
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 1.1e-69 267.7 318 49.1
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 2.0e-69 266.9 318 51.6
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.5e-69 266.5 318 50.3
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.4e-69 265.0 318 49.7
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.3e-68 264.2 318 48.4
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.3e-68 264.2 318 50.0
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.7e-68 263.8 318 48.7
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 2.8e-68 263.1 319 48.9
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 4.8e-68 262.3 318 49.7
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 6.3e-68 261.9 318 49.7
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 6.3e-68 261.9 318 49.7
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 6.3e-68 261.9 320 50.3
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 8.2e-68 261.5 318 48.1
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 1.1e-67 261.2 318 48.4
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 1.4e-67 260.8 318 50.6
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.8e-67 260.4 318 48.1
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.8e-67 260.4 318 49.1
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 2.4e-67 260.0 417 43.6
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 4.1e-67 259.2 318 49.4
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.9e-67 258.5 318 49.4
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 6.9e-67 258.5 321 50.8
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 9.1e-67 258.1 320 49.1
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 2.0e-66 256.9 320 48.8
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 2.0e-66 256.9 318 48.4
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.4e-66 256.1 318 47.5
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 4.5e-66 255.8 319 49.2
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 5.9e-66 255.4 320 48.4
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.0e-65 254.6 308 49.0
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.0e-65 254.6 318 46.9
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.3e-65 254.2 262 53.8
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.3e-65 254.2 318 48.4
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 2.2e-65 253.4 318 46.9
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 2.2e-65 253.4 318 47.2
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 2.2e-65 253.4 318 46.9
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.2e-65 253.4 318 48.1
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 2.9e-65 253.1 318 49.1
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.8e-65 252.7 318 46.5
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 3.8e-65 252.7 318 46.9
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 3.8e-65 252.7 318 48.4
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 6.5e-65 251.9 319 49.8
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 8.5e-65 251.5 318 46.2
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 1.1e-64 251.1 318 46.5
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.4e-64 250.8 340 46.8
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 1.4e-64 250.8 318 47.5
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 1.9e-64 250.4 318 46.5
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.9e-64 250.4 318 46.2
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 1.9e-64 250.4 318 46.2
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 3.2e-64 249.6 318 45.9
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 4.2e-64 249.2 318 46.2
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 5.5e-64 248.8 320 47.8
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 5.5e-64 248.8 318 46.9
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 5.5e-64 248.8 308 47.4
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 2.7e-63 246.5 318 45.9
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 2.7e-63 246.5 318 47.2
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.4e-62 244.2 318 47.5
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 5.1e-62 242.3 318 45.0
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 1.1e-61 241.1 318 45.0
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 9.7e-61 238.0 318 46.9
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 2.8e-60 236.5 318 45.3
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 8.2e-60 235.0 318 43.7
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 7.0e-59 231.9 318 44.3
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 5.9e-58 228.8 272 49.3
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.0e-57 228.0 318 45.0
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 6.1e-55 218.8 237 53.6
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.6e-53 213.4 308 43.2
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.2e-52 210.3 287 44.6
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 1.2e-47 194.5 318 41.8
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.6e-47 194.1 318 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 8.0e-47 191.8 318 41.5
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.4e-46 191.0 232 47.8
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.5e-45 187.6 169 60.4
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 2.0e-45 187.2 169 59.2
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 6.3e-44 182.2 315 40.3
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.4e-43 181.0 221 49.3
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.8e-43 180.6 169 56.8
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 1.8e-43 180.6 221 49.8
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 5.3e-43 179.1 318 37.1
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 3.5e-42 176.4 148 64.2
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 6.5e-41 172.2 169 53.8
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.5e-40 171.0 221 48.0
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.0e-38 163.3 206 48.5
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 5.2e-38 162.5 316 37.7
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 1.2e-37 161.4 142 60.6
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.5e-34 149.4 271 35.1
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 5.0e-33 146.0 329 34.7
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 8.0e-31 138.7 169 46.7
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.7e-28 131.0 330 32.7
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.7e-28 131.0 120 54.2
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 1.7e-28 131.0 320 34.4
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 3.7e-28 129.8 196 42.3
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 3.1e-27 126.7 92 66.3
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 7.0e-27 125.6 196 40.3
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 7.8e-26 122.1 121 57.0
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 1.6e-23 114.4 330 30.6
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.6e-23 114.4 175 42.9
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 6.8e-22 109.0 118 52.5
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.2e-21 108.2 255 32.9
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.5e-18 96.7 60 73.3
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.0e-17 95.1 142 40.1
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.7e-17 94.4 70 67.1
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.5e-16 91.3 63 63.5
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 5.6e-16 89.4 70 57.1
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.7e-12 77.8 58 63.8
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 2.4e-11 73.9 110 44.5
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 5.4e-11 72.8 61 59.0
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.6e-10 71.2 53 66.0
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 2.1e-10 70.9 92 41.3
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 3.5e-10 70.1 112 40.2
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.0e-09 68.6 182 33.5
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.0e-09 67.0 85 47.1
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 1.5e-08 64.7 101 41.6
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 5.6e-08 62.8 37 73.0
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 9.5e-08 62.0 41 70.7
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 2.3e-06 57.4 40 67.5


User provided reference genes

Program Settings