Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0116400 Rhododendron simsii HOM05D001176 ORTHO05D022296 1.6e-58 229.2 113 100.0
Rhsim01G0201000 Rhododendron simsii HOM05D001176 ORTHO05D022296 1.1e-30 136.7 69 97.1
RhsimUnG0006500 Rhododendron simsii HOM05D001176 ORTHO05D022296 1.8e-30 136.0 70 97.1
Actinidia03827 Actinidia chinensis HOM05D001176 ORTHO05D003317 3.1e-09 65.5 40 80.0
EL10Ac4g09433 Beta vulgaris HOM05D001176 ORTHO05D003317 3.1e-09 65.5 49 65.3
Ciclev10011312m.g Citrus clementina HOM05D001176 ORTHO05D003317 3.1e-09 65.5 40 80.0
DCAR_023843 Daucus carota HOM05D001176 ORTHO05D003317 3.1e-09 65.5 40 80.0
Prupe.6G358000 Prunus persica HOM05D001176 ORTHO05D003317 3.1e-09 65.5 40 80.0
Rhsim05G0168700 Rhododendron simsii HOM05D001176 ORTHO05D003317 3.1e-09 65.5 40 80.0
CSS0037928 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D003317 4.0e-09 65.1 40 77.5
Cpa.g.sc123.12 Carica papaya HOM05D001176 ORTHO05D003317 4.0e-09 65.1 40 77.5
Dinv05894 Davidia involucrata HOM05D001176 ORTHO05D003317 4.0e-09 65.1 40 77.5
Duzib106G0985 Durio zibethinus HOM05D001176 ORTHO05D003317 4.0e-09 65.1 40 77.5
Zm00001eb258960 Zea mays HOM05D001176 ORTHO05D003317 4.0e-09 65.1 62 59.7
Duzib128G0007 Durio zibethinus HOM05D001176 ORTHO05D003317 5.2e-09 64.7 40 75.0
PGR031G1111 Punica granatum HOM05D001176 ORTHO05D003317 5.2e-09 64.7 55 63.6
GSVIVG01019158001 Vitis vinifera HOM05D001176 ORTHO05D003317 5.2e-09 64.7 40 77.5
Atru.chr12.2158 Acer truncatum HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
MSTRG.9229 Avicennia marina HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
CiPaw.07G075100 Carya illinoinensis HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Migut.F02071 Erythranthe guttata HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Glyma.09G252800 Glycine max HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Glyma.18G239900 Glycine max HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Lj1g0018224 Lotus japonicus HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Nn1g03127 Nelumbo nucifera HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Nitab4.5_0000456g0030 Nicotiana tabacum HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Nitab4.5_0009814g0010 Nicotiana tabacum HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Oeu010181.1 Olea europaea HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Peaxi162Scf00215g00510 Petunia axillaris HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Phvul.008G056400 Phaseolus vulgaris HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Rhsim01G0115800 Rhododendron simsii HOM05D001176 ORTHO05D022296 6.8e-09 64.3 42 71.4
SalBow1G1247 Salvia bowleyana HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Sc09g0001650 Simmondsia chinensis HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Solyc04g051190.3 Solanum lycopersicum HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Sopen04g022560 Solanum pennellii HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
SGA_v2.0_scaffold13G06352 Striga asiatica HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
THA.LOC104814399 Tarenaya hassleriana HOM05D001176 ORTHO05D003317 6.8e-09 64.3 69 55.1
TWI59G0800 Tripterygium wilfordii HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
VMungo1383G3642 Vigna mungo HOM05D001176 ORTHO05D003317 6.8e-09 64.3 40 77.5
Gohir.A13G154700 Gossypium hirsutum HOM05D001176 ORTHO05D003317 8.9e-09 63.9 40 75.0
Gohir.D13G159400 Gossypium hirsutum HOM05D001176 ORTHO05D003317 8.9e-09 63.9 40 75.0
Gorai.013G180200 Gossypium raimondii HOM05D001176 ORTHO05D003317 8.9e-09 63.9 40 75.0
Manes.09G183600 Manihot esculenta HOM05D001176 ORTHO05D003317 8.9e-09 63.9 40 75.0
Nn3g19881 Nelumbo nucifera HOM05D001176 ORTHO05D003317 8.9e-09 63.9 40 75.0
SEGI_13377 Sequoiadendron giganteum HOM05D001176 ORTHO05D003317 8.9e-09 63.9 40 77.5
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.2e-08 63.5 69 53.6
ATR0088G045 Amborella trichopoda HOM05D001176 ORTHO05D003317 1.2e-08 63.5 40 75.0
CAN.G4.31 Capsicum annuum HOM05D001176 ORTHO05D003317 1.2e-08 63.5 40 77.5
COL.COLO4_27432 Corchorus olitorius HOM05D001176 ORTHO05D022296 1.2e-08 63.5 40 77.5
Eucgr.H01373 Eucalyptus grandis HOM05D001176 ORTHO05D003317 1.2e-08 63.5 40 75.0
Pp3c5_28020 Physcomitrium patens HOM05D001176 ORTHO05D003317 1.2e-08 63.5 55 60.0
Potri.013G088100 Populus trichocarpa HOM05D001176 ORTHO05D003317 1.2e-08 63.5 40 75.0
Sabra13G0069700 Salix brachista HOM05D001176 ORTHO05D003317 1.2e-08 63.5 40 75.0
Cc09_g03290 Coffea canephora HOM05D001176 ORTHO05D003317 1.5e-08 63.2 40 72.5
MD12G1257000 Malus domestica HOM05D001176 ORTHO05D003317 1.5e-08 63.2 40 77.5
Os02g0817900 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D003317 1.5e-08 63.2 62 56.5
TAR362G0187 Trochodendron aralioides HOM05D001176 ORTHO05D003317 1.5e-08 63.2 40 77.5
Aqoxy2G03809 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 75.0
AUR62000370 Chenopodium quinoa HOM05D001176 ORTHO05D003317 2.0e-08 62.8 49 63.3
FvH4_6g00890 Fragaria vesca HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 77.5
FAN05G5118 Fragaria x ananassa HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 77.5
FAN09G3806 Fragaria x ananassa HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 77.5
FAN14G4358 Fragaria x ananassa HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 77.5
Lalb_Chr03g0038311 Lupinus albus HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 75.0
MBI10_g09189_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 75.0
RcHm_v2.0_Chr3g0448381 Rosa chinensis HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 77.5
Thecc.05G203300 Theobroma cacao HOM05D001176 ORTHO05D003317 2.0e-08 62.8 40 75.0
PSO017G2236 Papaver somniferum HOM05D001176 ORTHO05D003317 2.6e-08 62.4 40 72.5
PSO063G1081 Papaver somniferum HOM05D001176 ORTHO05D003317 2.6e-08 62.4 40 72.5
AL1G45870 Arabidopsis lyrata HOM05D001176 ORTHO05D003317 3.4e-08 62.0 69 53.6
AT1G31800 Arabidopsis thaliana HOM05D001176 ORTHO05D003317 3.4e-08 62.0 69 53.6
CARHR031100 Cardamine hirsuta HOM05D001176 ORTHO05D003317 3.4e-08 62.0 55 61.8
Thhalv10007138m.g Eutrema salsugineum HOM05D001176 ORTHO05D003317 3.4e-08 62.0 55 61.8
Sp1g27490 Schrenkiella parvula HOM05D001176 ORTHO05D003317 3.4e-08 62.0 55 61.8
HPP92_003369 Vanilla planifolia HOM05D001176 ORTHO05D003317 3.4e-08 62.0 40 72.5
Cfa006301 Carpinus fangiana HOM05D001176 ORTHO05D003317 4.4e-08 61.6 40 75.0
Cre02.g142266 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D003317 4.4e-08 61.6 56 51.8
Ca_07959_v3 Cicer arietinum L. HOM05D001176 ORTHO05D003317 4.4e-08 61.6 40 75.0
Haze_04497 Corylus avellana HOM05D001176 ORTHO05D003317 4.4e-08 61.6 40 75.0
Psat3g105040 Pisum sativum HOM05D001176 ORTHO05D003317 4.4e-08 61.6 40 75.0
CANSAT11G0194 Cannabis sativa HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 75.0
CBR_g41079 Chara braunii HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 70.0
AUR62006725 Chenopodium quinoa HOM05D001176 ORTHO05D003317 5.8e-08 61.2 49 63.3
ClCG10G008080 Citrullus lanatus HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 72.5
MELO3C014945.2 Cucumis melo HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 72.5
CsaV3_3G007050 Cucumis sativus L. HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 72.5
Oeu054597.1 Olea europaea HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 72.5
Sed0016129 Sechium edule HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 72.5
Sed0016380 Sechium edule HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 72.5
SMO351G0009 Selaginella moellendorffii HOM05D001176 ORTHO05D003317 5.8e-08 61.2 56 60.7
vmacro19610 Vaccinium macrocarpon HOM05D001176 ORTHO05D003317 5.8e-08 61.2 40 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2586 Anthoceros agrestis HOM05D001176 ORTHO05D003317 7.5e-08 60.8 48 58.3
QL01p050622 Quercus lobata HOM05D001176 ORTHO05D003317 7.5e-08 60.8 40 70.0
Hund21873 Selenicereus undatus HOM05D001176 ORTHO05D003317 7.5e-08 60.8 49 59.2
arahy.Tifrunner.gnm1.ann1.570P5C Arachis hypogaea HOM05D001176 ORTHO05D003317 9.9e-08 60.5 41 70.7
arahy.Tifrunner.gnm1.ann1.F8T0MB Arachis hypogaea HOM05D001176 ORTHO05D003317 9.9e-08 60.5 41 70.7
MD04G1239800 Malus domestica HOM05D001176 ORTHO05D003317 9.9e-08 60.5 40 75.0
Mapoly0011s0135 Marchantia polymorpha HOM05D001176 ORTHO05D003317 9.9e-08 60.5 40 72.5
TPR.G29411 Trifolium pratense HOM05D001176 ORTHO05D003317 9.9e-08 60.5 40 72.5
BcaB04g18125 Brassica carinata HOM05D001176 ORTHO05D003317 1.3e-07 60.1 55 60.0
BcaC07g37726 Brassica carinata HOM05D001176 ORTHO05D003317 1.3e-07 60.1 55 60.0
A01p18860 Brassica napus HOM05D001176 ORTHO05D003317 1.3e-07 60.1 55 60.0
A08p10400 Brassica napus HOM05D001176 ORTHO05D003317 1.3e-07 60.1 55 60.0
BolC8t48109H Brassica oleracea HOM05D001176 ORTHO05D003317 1.3e-07 60.1 55 60.0
BraA01t01829Z Brassica rapa HOM05D001176 ORTHO05D003317 1.3e-07 60.1 55 60.0
BraA08t33039Z Brassica rapa HOM05D001176 ORTHO05D003317 1.3e-07 60.1 55 60.0
Lj2C52G4 Lonicera japonica HOM05D001176 ORTHO05D003317 1.3e-07 60.1 70 50.0
Medtr7g079440 Medicago truncatula HOM05D001176 ORTHO05D003317 1.3e-07 60.1 40 72.5
Carub.0001s3010 Capsella rubella HOM05D001176 ORTHO05D003317 1.7e-07 59.7 69 52.2
Rhsim01G0077800 Rhododendron simsii HOM05D000038 ORTHO05D006899 2.2e-07 59.3 42 73.8
Lsat_1_v5_gn_2_16321 Lactuca sativa HOM05D001176 ORTHO05D003317 2.9e-07 58.9 40 72.5
ECA238G4204 Erigeron canadensis HOM05D001176 ORTHO05D003317 3.7e-07 58.5 40 70.0
HanXRQChr17g0559051 Helianthus annuus HOM05D001176 ORTHO05D003317 3.7e-07 58.5 40 70.0
CDE02G2271 Ceratophyllum demersum HOM05D001176 ORTHO05D003317 4.9e-07 58.2 40 70.0
Sed0023390 Sechium edule HOM05D001176 ORTHO05D003317 1.4e-06 56.6 40 65.0
MCO16G584 Micromonas commoda HOM05D001176 ORTHO05D003317 7.1e-06 54.3 60 40.0


User provided reference genes

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