Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 6.8e-145 517.3 261 100.0
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 8.6e-39 164.9 280 43.6
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.1e-37 160.2 269 44.6
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 3.0e-31 139.8 276 40.6
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.0e-31 139.8 262 40.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 3.9e-31 139.4 279 38.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 5.0e-31 139.0 278 40.6
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 4.3e-30 136.0 272 39.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 7.3e-30 135.2 273 38.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 9.5e-30 134.8 273 38.5
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 9.5e-30 134.8 274 40.9
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.8e-28 130.6 279 38.4
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 4.0e-28 129.4 278 41.0
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 5.2e-28 129.0 294 39.1
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 6.4e-26 122.1 272 36.8
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.9e-25 120.6 277 39.4
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.0e-25 118.6 277 39.0
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 7.0e-25 118.6 280 36.1
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.0e-25 118.6 279 38.4
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 4.6e-24 115.9 276 35.1
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 6.0e-24 115.5 279 39.1
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 7.8e-24 115.2 285 34.7
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 7.8e-24 115.2 278 36.3
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.3e-23 114.4 267 36.7
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.3e-23 113.6 268 37.3
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 2.3e-23 113.6 262 34.7
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 3.0e-23 113.2 115 55.7
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.9e-23 112.8 267 36.7
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 5.0e-23 112.5 285 38.2
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.1e-22 111.3 284 37.3
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.5e-22 110.2 285 37.9
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.5e-22 110.2 285 37.9
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 4.3e-22 109.4 257 39.7
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.6e-22 109.0 286 36.7
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 5.6e-22 109.0 276 35.9
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-21 107.5 279 36.9
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.1e-21 107.1 281 35.9
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.8e-21 106.7 286 35.3
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.7e-21 105.9 269 34.6
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.3e-20 103.6 273 37.4
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.0e-20 102.8 270 35.9
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.0e-20 102.8 286 33.6
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 8.9e-20 101.7 265 34.3
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.5e-19 100.9 295 34.6
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 3.4e-19 99.8 290 35.5
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 4.4e-19 99.4 256 37.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 5.8e-19 99.0 279 36.2
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.3e-18 97.8 295 33.6
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.7e-18 97.4 300 34.3
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.2e-18 97.1 265 32.8
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.2e-18 97.1 269 32.0
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 3.7e-18 96.3 263 35.7
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 4.9e-18 95.9 261 35.6
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 4.9e-18 95.9 291 34.7
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 6.4e-18 95.5 279 33.7
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 8.3e-18 95.1 264 38.3
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 2.4e-17 93.6 293 33.1
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.4e-17 93.6 266 36.8
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.4e-17 93.6 266 36.8
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 2.4e-17 93.6 282 35.8
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 2.4e-17 93.6 266 32.3
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 5.4e-17 92.4 262 33.2
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 7.1e-17 92.0 271 37.3
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 7.1e-17 92.0 272 32.4
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 9.2e-17 91.7 266 38.3
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.2e-16 91.3 287 33.4
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.6e-16 90.9 311 32.2
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.6e-16 90.9 287 33.1
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 2.1e-16 90.5 266 33.1
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 2.1e-16 90.5 279 33.7
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 2.7e-16 90.1 259 32.0
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.5e-16 89.7 279 34.4
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 4.6e-16 89.4 262 32.8
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.0e-16 89.0 268 35.1
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 7.8e-16 88.6 271 33.2
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.0e-15 88.2 271 36.5
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.0e-15 88.2 277 33.6
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.3e-15 87.8 264 31.8
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.7e-15 87.4 279 33.7
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 3.0e-15 86.7 267 34.1
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 3.0e-15 86.7 276 35.1
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.9e-15 86.3 290 33.8
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 6.6e-15 85.5 269 34.6
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 6.6e-15 85.5 123 46.3
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 8.6e-15 85.1 265 33.2
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.5e-14 84.3 265 31.3
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.5e-14 83.6 266 31.2
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 5.6e-14 82.4 280 32.5
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 7.3e-14 82.0 284 34.2
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.6e-13 80.9 263 32.3
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.8e-13 80.1 278 33.1
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.8e-13 80.1 269 32.3
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.8e-13 80.1 269 32.3
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.8e-13 80.1 157 48.4
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 6.2e-13 79.0 261 31.4
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 6.2e-13 79.0 272 34.2
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 8.1e-13 78.6 267 30.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 8.1e-13 78.6 163 42.9
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.1e-12 78.2 273 33.0
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 1.1e-12 78.2 262 32.1
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.4e-12 77.8 177 36.7
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.8e-12 77.4 269 32.0
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.8e-12 77.4 262 27.9
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 2.3e-12 77.0 274 29.9
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 2.3e-12 77.0 111 45.0
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 4.0e-12 76.3 267 31.5
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 6.8e-12 75.5 262 33.6
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 6.8e-12 75.5 253 28.9
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-11 74.7 185 35.7
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-11 74.7 185 35.7
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.5e-11 74.3 259 30.5
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.5e-11 74.3 249 32.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.4e-11 73.2 262 33.2
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 7.6e-11 72.0 184 33.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 7.6e-11 72.0 184 33.7
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.3e-10 71.2 253 28.9
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-10 70.5 185 35.1
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-10 70.5 185 35.1
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 2.2e-10 70.5 256 34.0
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.9e-10 70.1 185 35.1
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.8e-10 69.7 282 29.8
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 3.8e-10 69.7 256 30.1
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.8e-10 69.7 265 29.1
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 6.4e-10 68.9 248 31.0
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 3.2e-09 66.6 122 36.9
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 9.2e-09 65.1 265 30.6
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 4.6e-08 62.8 258 27.9
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.3e-07 61.2 255 28.2
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 3.0e-07 60.1 269 31.2
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 6.6e-07 58.9 181 37.0
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.5e-06 57.8 282 25.9
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.5e-06 57.8 124 33.9
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.9e-06 57.4 277 26.7
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-06 56.6 160 33.1
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 3.3e-06 56.6 310 26.8
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 3.3e-06 56.6 115 37.4
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 4.3e-06 56.2 48 58.3
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 5.6e-06 55.8 285 25.6
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 7.3e-06 55.5 189 30.7
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 9.6e-06 55.1 60 51.7


User provided reference genes

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