Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0115500 Rhododendron simsii HOM05D004125 ORTHO05D004933 3.4e-70 268.1 122 100.0
Glyma.03G178800 Glycine max HOM05D004125 ORTHO05D004933 4.2e-20 101.7 81 60.5
Glyma.19G179500 Glycine max HOM05D004125 ORTHO05D004933 5.4e-20 101.3 81 60.5
Duzib128G0675 Durio zibethinus HOM05D004125 ORTHO05D004933 7.1e-20 100.9 78 60.3
Gorai.009G419400 Gossypium raimondii HOM05D004125 ORTHO05D004933 7.1e-20 100.9 78 61.5
VMungo1383G2095 Vigna mungo HOM05D004125 ORTHO05D004933 9.3e-20 100.5 81 59.3
Phvul.001G175500 Phaseolus vulgaris HOM05D004125 ORTHO05D004933 1.2e-19 100.1 81 61.7
Gohir.A04G075700 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.6e-19 99.8 78 61.5
Gohir.D04G114800 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.6e-19 99.8 78 62.8
Thecc.05G056000 Theobroma cacao HOM05D004125 ORTHO05D004933 3.5e-19 98.6 78 59.0
Atru.chr12.53 Acer truncatum HOM05D004125 ORTHO05D004933 6.0e-19 97.8 97 48.5
Medtr7g100870 Medicago truncatula HOM05D004125 ORTHO05D004933 6.0e-19 97.8 78 59.0
Duzib106G0069 Durio zibethinus HOM05D004125 ORTHO05D004933 7.9e-19 97.4 78 59.0
Lj2A109G40 Lonicera japonica HOM05D004125 ORTHO05D004933 7.9e-19 97.4 90 51.1
Manes.08G004600 Manihot esculenta HOM05D004125 ORTHO05D004933 1.3e-18 96.7 81 56.8
Lj1g0007543 Lotus japonicus HOM05D004125 ORTHO05D004933 1.7e-18 96.3 81 56.8
Atru.chr8.1894 Acer truncatum HOM05D004125 ORTHO05D004933 2.3e-18 95.9 78 55.1
Duzib093G1421 Durio zibethinus HOM05D004125 ORTHO05D004933 2.3e-18 95.9 78 57.7
MELO3C014254.2 Cucumis melo HOM05D004125 ORTHO05D004933 3.9e-18 95.1 78 55.1
CiPaw.09G178600 Carya illinoinensis HOM05D004125 ORTHO05D004933 5.1e-18 94.7 81 56.8
CsaV3_6G039390 Cucumis sativus L. HOM05D004125 ORTHO05D004933 5.1e-18 94.7 78 55.1
Duzib093G1540 Durio zibethinus HOM05D004125 ORTHO05D004933 6.6e-18 94.4 78 57.7
Eucgr.A01169 Eucalyptus grandis HOM05D004125 ORTHO05D004933 6.6e-18 94.4 82 54.9
arahy.Tifrunner.gnm1.ann1.05RLXM Arachis hypogaea HOM05D004125 ORTHO05D004933 8.7e-18 94.0 81 56.8
Ciclev10012548m.g Citrus clementina HOM05D004125 ORTHO05D004933 8.7e-18 94.0 78 56.4
COL.COLO4_27059 Corchorus olitorius HOM05D004125 ORTHO05D004933 1.1e-17 93.6 78 57.7
Manes.09G077179 Manihot esculenta HOM05D004125 ORTHO05D004933 1.1e-17 93.6 78 56.4
SalBow3G3732 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.1e-17 93.6 188 33.0
TWI53G0971 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 1.1e-17 93.6 78 55.1
Hma1.2p1_0614F.1_g189590 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.5e-17 93.2 78 57.7
Hma1.2p1_0614F.1_g189605 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.5e-17 93.2 78 57.7
Oeu059982.1 Olea europaea HOM05D004125 ORTHO05D004933 1.5e-17 93.2 190 32.6
CSS0038970 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 1.9e-17 92.8 78 57.7
MD04G1102200 Malus domestica HOM05D004125 ORTHO05D004933 1.9e-17 92.8 78 57.7
Peaxi162Scf00005g03811 Petunia axillaris HOM05D004125 ORTHO05D004933 1.9e-17 92.8 78 57.7
Peaxi162Scf00472g00039 Petunia axillaris HOM05D004125 ORTHO05D004933 1.9e-17 92.8 78 53.8
TPR.G18284 Trifolium pratense HOM05D004125 ORTHO05D004933 1.9e-17 92.8 78 57.7
Dinv35730 Davidia involucrata HOM05D004125 ORTHO05D004933 2.5e-17 92.4 77 58.4
Actinidia13097 Actinidia chinensis HOM05D004125 ORTHO05D004933 3.3e-17 92.0 78 56.4
Hma1.2p1_0614F.1_g189600 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 3.3e-17 92.0 78 56.4
CANSAT80G2417 Cannabis sativa HOM05D004125 ORTHO05D004933 5.6e-17 91.3 78 56.4
Oeu001336.1 Olea europaea HOM05D004125 ORTHO05D004933 5.6e-17 91.3 190 31.6
Ca_08833_v3 Cicer arietinum L. HOM05D004125 ORTHO05D004933 7.3e-17 90.9 78 56.4
Hma1.2p1_0111F.1_g054010 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 7.3e-17 90.9 78 53.8
Nitab4.5_0008568g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 7.3e-17 90.9 189 31.2
Nn2g13030 Nelumbo nucifera HOM05D004125 ORTHO05D004933 9.6e-17 90.5 78 55.1
Nitab4.5_0000669g0120 Nicotiana tabacum HOM05D004125 ORTHO05D004933 9.6e-17 90.5 78 56.4
Nitab4.5_0006156g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 9.6e-17 90.5 78 56.4
TWI74G1587 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 9.6e-17 90.5 78 53.8
Actinidia05264 Actinidia chinensis HOM05D004125 ORTHO05D004933 1.3e-16 90.1 78 55.1
CAN.G1091.11 Capsicum annuum HOM05D004125 ORTHO05D004933 1.3e-16 90.1 78 56.4
Nitab4.5_0003871g0020 Nicotiana tabacum HOM05D004125 ORTHO05D004933 1.3e-16 90.1 78 52.6
Psat0s1011g0040 Pisum sativum HOM05D004125 ORTHO05D004933 1.3e-16 90.1 78 57.7
Potri.016G087200 Populus trichocarpa HOM05D004125 ORTHO05D004933 1.3e-16 90.1 78 55.1
Sabra06G0102300 Salix brachista HOM05D004125 ORTHO05D004933 1.3e-16 90.1 77 54.5
arahy.Tifrunner.gnm1.ann1.X8Y7H8 Arachis hypogaea HOM05D004125 ORTHO05D004933 1.6e-16 89.7 80 56.2
MSTRG.19144 Avicennia marina HOM05D004125 ORTHO05D004933 1.6e-16 89.7 81 53.1
ClCG04G008880 Citrullus lanatus HOM05D004125 ORTHO05D004933 1.6e-16 89.7 78 52.6
Lalb_Chr20g0112841 Lupinus albus HOM05D004125 ORTHO05D004933 1.6e-16 89.7 78 55.1
Sed0009991 Sechium edule HOM05D004125 ORTHO05D004933 1.6e-16 89.7 78 52.6
Nn2g10707 Nelumbo nucifera HOM05D004125 ORTHO05D004933 2.1e-16 89.4 78 53.8
DCAR_017716 Daucus carota HOM05D004125 ORTHO05D004933 2.8e-16 89.0 78 53.8
MD12G1121900 Malus domestica HOM05D004125 ORTHO05D004933 2.8e-16 89.0 78 56.4
EL10Ac7g16513 Beta vulgaris HOM05D004125 ORTHO05D004933 3.6e-16 88.6 79 53.2
CSS0018032 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 3.6e-16 88.6 78 53.8
DCAR_014971 Daucus carota HOM05D004125 ORTHO05D004933 3.6e-16 88.6 75 54.7
Sed0002474 Sechium edule HOM05D004125 ORTHO05D004933 3.6e-16 88.6 78 52.6
Sopen09g002360 Solanum pennellii HOM05D004125 ORTHO05D004933 3.6e-16 88.6 78 55.1
Prupe.6G240600 Prunus persica HOM05D004125 ORTHO05D004933 4.8e-16 88.2 78 53.8
PGSC0003DMG400001744 Solanum tuberosum HOM05D004125 ORTHO05D004933 4.8e-16 88.2 78 55.1
Sabra16G0093400 Salix brachista HOM05D004125 ORTHO05D004933 6.2e-16 87.8 77 54.5
MSTRG.5726 Avicennia marina HOM05D004125 ORTHO05D004933 8.1e-16 87.4 82 53.7
Cfa017522 Carpinus fangiana HOM05D004125 ORTHO05D004933 8.1e-16 87.4 78 55.1
CDE04G0632 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 8.1e-16 87.4 170 31.2
RcHm_v2.0_Chr3g0469051 Rosa chinensis HOM05D004125 ORTHO05D004933 1.1e-15 87.0 79 55.7
THA.LOC104806497 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 1.1e-15 87.0 78 52.6
Sopen10g033700 Solanum pennellii HOM05D004125 ORTHO05D004933 1.4e-15 86.7 78 52.6
Solyc09g007490.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 1.8e-15 86.3 78 53.8
Solyc10g084260.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 1.8e-15 86.3 78 52.6
Cc06_g03700 Coffea canephora HOM05D004125 ORTHO05D004933 3.1e-15 85.5 78 53.8
PSO063G5409 Papaver somniferum HOM05D004125 ORTHO05D004933 3.1e-15 85.5 79 51.9
QL04p031281 Quercus lobata HOM05D004125 ORTHO05D004933 3.1e-15 85.5 101 43.6
QL07p045037 Quercus lobata HOM05D004125 ORTHO05D004933 3.1e-15 85.5 101 43.6
TAR633G1040 Trochodendron aralioides HOM05D004125 ORTHO05D004933 3.1e-15 85.5 78 51.3
Aa31LG5G22400 Aethionema arabicum HOM05D004125 ORTHO05D004933 4.0e-15 85.1 79 49.4
Gohir.A01G216300 Gossypium hirsutum HOM05D004125 ORTHO05D004933 4.0e-15 85.1 78 50.0
Gohir.D01G205100 Gossypium hirsutum HOM05D004125 ORTHO05D004933 4.0e-15 85.1 78 50.0
Gorai.002G249400 Gossypium raimondii HOM05D004125 ORTHO05D004933 4.0e-15 85.1 78 50.0
Migut.J00424 Erythranthe guttata HOM05D004125 ORTHO05D004933 6.9e-15 84.3 78 51.3
PGR142G2082 Punica granatum HOM05D004125 ORTHO05D004933 9.0e-15 84.0 81 51.9
TAR636G1871 Trochodendron aralioides HOM05D004125 ORTHO05D004933 9.0e-15 84.0 78 51.3
CDE07G0936 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 1.5e-14 83.2 78 50.0
Potri.006G130300 Populus trichocarpa HOM05D004125 ORTHO05D004933 1.5e-14 83.2 78 51.3
PGR004G0966 Punica granatum HOM05D004125 ORTHO05D004933 1.5e-14 83.2 79 50.6
SalBow5G0726 Salvia bowleyana HOM05D004125 ORTHO05D004933 2.0e-14 82.8 102 46.1
PGSC0003DMG400010481 Solanum tuberosum HOM05D004125 ORTHO05D004933 2.0e-14 82.8 78 50.0
FAN02G0333 Fragaria x ananassa HOM05D004125 ORTHO05D004933 2.6e-14 82.4 90 48.9
FAN09G3242 Fragaria x ananassa HOM05D004125 ORTHO05D004933 2.6e-14 82.4 90 48.9
BcaC01g05633 Brassica carinata HOM05D004125 ORTHO05D004933 3.4e-14 82.0 171 29.8
A03p20450 Brassica napus HOM05D004125 ORTHO05D004933 3.4e-14 82.0 171 29.8
C03p24050 Brassica napus HOM05D004125 ORTHO05D004933 3.4e-14 82.0 171 29.8
BolC3t14795H Brassica oleracea HOM05D004125 ORTHO05D004933 3.4e-14 82.0 171 29.8
BraA03t11288Z Brassica rapa HOM05D004125 ORTHO05D004933 3.4e-14 82.0 171 29.8
FvH4_6g15540 Fragaria vesca HOM05D004125 ORTHO05D004933 4.5e-14 81.6 79 53.2
SalBow5G2572 Salvia bowleyana HOM05D004125 ORTHO05D004933 5.8e-14 81.3 78 51.3
SEGI_21681 Sequoiadendron giganteum HOM05D004125 ORTHO05D004933 5.8e-14 81.3 81 50.6
CARHR131620 Cardamine hirsuta HOM05D004125 ORTHO05D004933 9.9e-14 80.5 79 46.8
AUR62040494 Chenopodium quinoa HOM05D004125 ORTHO05D004933 9.9e-14 80.5 83 45.8
PSO339G6532 Papaver somniferum HOM05D004125 ORTHO05D004933 9.9e-14 80.5 77 50.6
Sc07g0006290 Simmondsia chinensis HOM05D004125 ORTHO05D004933 9.9e-14 80.5 81 46.9
THA.LOC104823453 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 9.9e-14 80.5 76 52.6
vmacro20050 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 9.9e-14 80.5 66 60.6
AL4G33460 Arabidopsis lyrata HOM05D004125 ORTHO05D004933 1.3e-13 80.1 172 29.7
Carub.0004s1900 Capsella rubella HOM05D004125 ORTHO05D004933 1.3e-13 80.1 172 29.7
ECA233G4685 Erigeron canadensis HOM05D004125 ORTHO05D004933 1.3e-13 80.1 78 48.7
FAN14G3382 Fragaria x ananassa HOM05D004125 ORTHO05D004933 1.3e-13 80.1 79 51.9
PSO384G3223 Papaver somniferum HOM05D004125 ORTHO05D004933 1.3e-13 80.1 78 48.7
Sp4g19430 Schrenkiella parvula HOM05D004125 ORTHO05D004933 1.7e-13 79.7 79 46.8
C04p65690 Brassica napus HOM05D004125 ORTHO05D004933 2.2e-13 79.3 79 45.6
BraA04t18316Z Brassica rapa HOM05D004125 ORTHO05D004933 2.2e-13 79.3 79 45.6
CAN.G915.16 Capsicum annuum HOM05D004125 ORTHO05D004933 2.2e-13 79.3 184 29.3
AT2G37110 Arabidopsis thaliana HOM05D004125 ORTHO05D004933 3.8e-13 78.6 172 29.7
BcaB06g28978 Brassica carinata HOM05D004125 ORTHO05D004933 3.8e-13 78.6 79 45.6
Thhalv10017172m.g Eutrema salsugineum HOM05D004125 ORTHO05D004933 3.8e-13 78.6 79 45.6
Lj3C980T5 Lonicera japonica HOM05D004125 ORTHO05D004933 3.8e-13 78.6 57 57.9
SGA_v2.0_scaffold126G33910 Striga asiatica HOM05D004125 ORTHO05D004933 3.8e-13 78.6 77 50.6
Ah.15g092190 Amaranthus hybridus HOM05D004125 ORTHO05D004933 4.9e-13 78.2 170 29.4
Haze_20626 Corylus avellana HOM05D004125 ORTHO05D004933 4.9e-13 78.2 87 47.1
SalBow5G1492 Salvia bowleyana HOM05D004125 ORTHO05D004933 4.9e-13 78.2 78 50.0
BolC4t28068H Brassica oleracea HOM05D004125 ORTHO05D004933 6.4e-13 77.8 80 45.0
PSO339G6461 Papaver somniferum HOM05D004125 ORTHO05D004933 6.4e-13 77.8 78 47.4
TAR623G1581 Trochodendron aralioides HOM05D004125 ORTHO05D004933 6.4e-13 77.8 97 42.3
BcaC02g07548 Brassica carinata HOM05D004125 ORTHO05D004933 8.4e-13 77.4 79 44.3
Aqoxy4G03230 Aquilegia oxysepala HOM05D004125 ORTHO05D004933 1.4e-12 76.6 100 43.0
BcaB01g03789 Brassica carinata HOM05D004125 ORTHO05D004933 1.4e-12 76.6 172 29.7
A04p28380 Brassica napus HOM05D004125 ORTHO05D004933 4.2e-12 75.1 79 44.3
Lsat_1_v5_gn_6_30280 Lactuca sativa HOM05D004125 ORTHO05D004933 7.1e-12 74.3 201 28.4
RhsimUnG0115400 Rhododendron simsii HOM05D004125 ORTHO05D004933 9.3e-12 73.9 55 63.6
Os01g0157900 Oryza sativa ssp. japonica HOM05D004125 ORTHO05D004933 1.2e-11 73.6 78 46.2
SGA_v2.0_scaffold94G28676 Striga asiatica HOM05D004125 ORTHO05D004933 2.1e-11 72.8 176 31.2
Migut.L01669 Erythranthe guttata HOM05D004125 ORTHO05D004933 4.6e-11 71.6 80 48.8
HPP92_012053 Vanilla planifolia HOM05D004125 ORTHO05D004933 1.8e-10 69.7 79 45.6
HanXRQChr13g0399591 Helianthus annuus HOM05D004125 ORTHO05D004933 2.3e-10 69.3 78 46.2
Zm00001eb123690 Zea mays HOM05D004125 ORTHO05D004933 8.7e-10 67.4 79 44.3
Rhsim04G0149200 Rhododendron simsii HOM05D004125 ORTHO05D004933 3.3e-09 65.5 93 37.6
ATR0594G238 Amborella trichopoda HOM05D004125 ORTHO05D004933 1.1e-07 60.5 74 47.3
unitig_0.g689 Utricularia gibba HOM05D004125 ORTHO05D004933 3.4e-06 55.5 76 40.8


User provided reference genes

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