Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 5.9e-67 257.3 122 100.0
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 1.2e-56 223.0 105 98.1
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.9e-34 148.3 104 62.5
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 1.1e-31 140.2 99 63.6
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 4.0e-31 138.3 102 57.8
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 1.2e-30 136.7 99 54.5
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 2.0e-30 136.0 92 60.9
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 2.6e-30 135.6 77 68.8
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 5.8e-30 134.4 101 57.4
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 3.8e-29 131.7 80 63.8
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 3.8e-29 131.7 98 58.2
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 4.9e-29 131.3 87 59.8
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 4.9e-29 131.3 102 52.9
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 8.4e-29 130.6 99 54.5
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.1e-28 130.2 97 58.8
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.9e-28 129.4 103 57.3
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 1.9e-28 129.4 99 55.6
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 1.9e-28 129.4 99 55.6
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 2.4e-28 129.0 102 53.9
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 4.2e-28 128.3 101 55.4
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 5.4e-28 127.9 99 54.5
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 1.6e-27 126.3 108 50.0
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 2.1e-27 125.9 102 56.9
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 4.6e-27 124.8 108 50.0
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 4.6e-27 124.8 117 53.8
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 7.8e-27 124.0 88 54.5
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 7.8e-27 124.0 108 49.1
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 1.3e-26 123.2 86 54.7
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 2.3e-26 122.5 116 52.6
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 3.0e-26 122.1 104 49.0
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 5.1e-26 121.3 105 53.3
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 8.7e-26 120.6 102 52.9
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 1.1e-25 120.2 85 57.6
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 4.3e-25 118.2 92 55.4
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 5.6e-25 117.9 87 57.5
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 5.6e-25 117.9 81 56.8
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.8e-24 115.5 93 52.7
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 8.1e-24 114.0 110 49.1
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 4.0e-23 111.7 108 49.1
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 9.0e-23 110.5 93 50.5
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 1.2e-22 110.2 106 47.2
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 1.2e-22 110.2 87 49.4
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 1.5e-22 109.8 106 47.2
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 3.4e-22 108.6 101 47.5
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 5.8e-22 107.8 106 46.2
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 5.8e-22 107.8 90 50.0
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 1.7e-21 106.3 90 51.1
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 3.8e-21 105.1 69 62.3
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 3.5e-19 98.6 80 55.0
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 1.0e-18 97.1 109 45.0
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 1.3e-18 96.7 104 43.3
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 1.7e-18 96.3 58 63.8
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 3.0e-18 95.5 111 41.4
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 5.1e-18 94.7 93 40.9
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 1.1e-17 93.6 103 44.7
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 1.1e-17 93.6 103 44.7
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 1.1e-17 93.6 103 44.7
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 1.5e-17 93.2 104 43.3
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 2.5e-17 92.4 112 40.2
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 4.3e-17 91.7 111 39.6
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 4.3e-17 91.7 111 39.6
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 5.6e-17 91.3 66 53.0
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 7.3e-17 90.9 111 39.6
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 7.3e-17 90.9 66 53.0
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 9.6e-17 90.5 92 47.8
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 1.3e-16 90.1 111 41.4
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 1.6e-16 89.7 111 41.4
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 3.6e-16 88.6 111 38.7
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 8.1e-16 87.4 98 39.8
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 1.8e-15 86.3 101 38.6
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 3.1e-15 85.5 100 43.0
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 3.1e-15 85.5 100 43.0
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 3.1e-15 85.5 100 43.0
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 3.4e-14 82.0 89 40.4
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 1.9e-12 76.3 109 39.4
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 2.4e-12 75.9 104 38.5
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 3.2e-12 75.5 93 40.9
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 3.2e-12 75.5 93 40.9
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 4.2e-12 75.1 93 40.9
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 3.5e-11 72.0 102 33.3
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 6.9e-07 57.8 79 39.2


User provided reference genes

Program Settings