Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 3.2e-275 951.0 447 100.0
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.6e-271 938.7 447 98.9
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.6e-223 779.2 448 82.4
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 4.8e-223 777.7 444 82.0
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 5.8e-221 770.8 444 81.1
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 5.8e-221 770.8 430 87.0
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 5.5e-219 764.2 445 80.9
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 7.1e-219 763.8 447 80.5
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 9.3e-219 763.5 445 80.2
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.3e-217 759.6 448 79.0
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 7.4e-216 753.8 446 79.4
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 3.7e-215 751.5 446 78.9
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 3.7e-215 751.5 446 79.4
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 3.1e-214 748.4 446 78.7
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 4.1e-214 748.0 444 78.6
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 9.0e-214 746.9 448 77.9
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 1.2e-213 746.5 445 78.7
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 1.5e-213 746.1 445 79.1
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 5.9e-213 744.2 446 78.5
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 2.2e-212 742.3 446 78.7
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.2e-211 738.4 446 77.6
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 5.5e-211 737.6 446 79.1
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 5.5e-211 737.6 446 79.1
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 5.5e-211 737.6 444 78.2
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.6e-210 736.1 448 77.0
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.0e-209 733.4 448 77.5
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 1.8e-209 732.6 440 78.6
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.0e-209 731.9 446 76.7
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 3.0e-209 731.9 446 77.4
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 5.1e-209 731.1 444 77.5
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 1.5e-208 729.6 445 78.4
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 3.3e-208 728.4 447 77.2
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 9.7e-208 726.9 427 80.1
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 2.2e-207 725.7 444 76.1
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 2.2e-207 725.7 445 76.2
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 1.8e-206 722.6 445 76.4
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 9.1e-206 720.3 486 71.6
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 3.4e-205 718.4 446 75.8
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.4e-205 718.4 448 74.6
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 5.9e-205 717.6 448 75.0
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.7e-205 717.2 444 76.1
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 1.3e-204 716.5 444 76.4
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.2e-204 715.7 444 75.7
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 6.5e-204 714.1 445 74.8
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.5e-204 713.8 444 75.5
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 2.5e-203 712.2 448 74.1
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 5.5e-203 711.1 446 75.6
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 7.2e-203 710.7 449 74.6
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 7.2e-203 710.7 446 76.2
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.6e-202 709.5 445 73.3
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.6e-202 709.5 445 74.4
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 2.7e-202 708.8 443 73.4
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 2.7e-202 708.8 443 73.6
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 4.7e-202 708.0 451 75.6
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 7.9e-202 707.2 445 73.0
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 1.4e-201 706.4 448 74.3
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 1.8e-201 706.1 444 74.5
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 3.0e-201 705.3 444 73.2
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 5.1e-201 704.5 442 74.0
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 5.1e-201 704.5 442 75.6
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 8.8e-201 703.7 443 74.9
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.1e-200 703.4 479 70.6
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 1.1e-200 703.4 442 72.6
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 2.0e-200 702.6 443 74.0
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 2.0e-200 702.6 424 77.8
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 4.4e-200 701.4 443 74.3
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.4e-200 701.4 444 74.5
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 5.7e-200 701.0 442 73.3
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 5.7e-200 701.0 443 74.9
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 7.4e-200 700.7 443 73.1
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 9.7e-200 700.3 447 74.3
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 9.7e-200 700.3 435 77.9
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 1.3e-199 699.9 444 73.9
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 1.3e-199 699.9 443 72.5
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.8e-199 698.7 444 74.5
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 3.7e-199 698.4 447 74.3
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 3.7e-199 698.4 443 74.0
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 4.8e-199 698.0 455 74.7
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 8.2e-199 697.2 444 73.6
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 8.2e-199 697.2 446 74.2
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.4e-198 695.7 444 74.1
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 3.1e-198 695.3 443 72.0
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 9.1e-198 693.7 443 72.9
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 5.9e-197 691.0 443 72.9
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 5.9e-197 691.0 443 72.7
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 5.9e-197 691.0 446 72.9
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 5.0e-196 688.0 531 63.8
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 5.0e-196 688.0 446 72.6
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 8.5e-196 687.2 443 73.1
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 6.1e-194 681.0 449 72.2
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 2.3e-193 679.1 447 71.8
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 6.7e-193 677.6 483 66.7
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 8.8e-193 677.2 446 72.2
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 4.4e-192 674.9 455 71.0
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 5.7e-192 674.5 439 72.0
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.2e-191 672.5 452 69.5
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.8e-191 672.2 453 69.5
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 6.3e-191 671.0 429 73.7
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.1e-190 668.7 429 73.4
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 2.0e-189 666.0 428 73.6
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 5.9e-189 664.5 428 73.4
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 5.9e-189 664.5 456 69.7
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 2.2e-188 662.5 422 74.6
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.1e-187 660.2 444 70.0
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 4.8e-183 644.8 447 66.4
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 4.1e-182 641.7 445 66.1
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 7.0e-182 641.0 444 70.3
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 7.5e-176 620.9 431 68.4
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 9.1e-174 614.0 428 70.6
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.0e-165 586.3 467 65.5
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 5.9e-165 584.7 371 74.9
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 4.4e-160 568.5 448 63.4
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.1e-158 563.9 445 61.6
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 7.0e-158 561.2 443 59.6
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 9.2e-158 560.8 444 61.7
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 2.3e-156 556.2 300 84.3
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 9.5e-155 550.8 448 62.3
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 3.7e-151 538.9 445 59.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 6.4e-151 538.1 385 64.9
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 4.1e-142 508.8 385 63.4
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 2.3e-132 476.5 446 52.0
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.5e-128 463.8 497 51.9
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.7e-127 460.3 492 52.0
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 4.9e-127 458.8 301 72.4
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 2.8e-122 443.0 495 46.1
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 6.7e-116 421.8 496 45.4
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 1.8e-108 397.1 359 55.7
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.0e-48 197.6 115 76.5
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 7.8e-32 142.5 82 82.9
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.3e-30 136.0 115 57.4
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 4.4e-27 126.7 121 57.0
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 4.4e-27 126.7 121 57.0
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 3.2e-25 120.6 120 52.5
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 9.6e-22 109.0 136 46.3
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 2.0e-19 101.3 63 73.0
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 2.0e-19 101.3 66 72.7
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 7.6e-19 99.4 66 71.2
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.4e-17 95.1 55 78.2
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 1.9e-17 94.7 64 70.3
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 6.4e-10 69.7 72 48.6
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.2e-08 65.5 286 26.9
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 1.7e-07 61.6 57 54.4
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.9e-06 58.2 120 34.2
CAN.G327.2 Capsicum annuum HOM05D001287 ORTHO05D010951 3.3e-06 57.4 25 96.0
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 7.3e-06 56.2 137 30.7


User provided reference genes

Program Settings