Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 8.1e-65 250.4 136 100.0
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 3.2e-61 238.4 119 98.3
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 3.5e-52 208.4 117 88.0
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 3.6e-49 198.4 123 81.3
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 8.1e-49 197.2 117 80.3
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 4.0e-48 194.9 119 81.5
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 4.0e-48 194.9 96 95.8
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 1.5e-47 193.0 116 81.0
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 2.0e-47 192.6 126 78.6
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 9.9e-47 190.3 119 77.3
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 9.9e-47 190.3 121 78.5
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 9.9e-47 190.3 118 79.7
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 1.3e-46 189.9 122 77.9
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 1.3e-46 189.9 120 79.2
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 1.3e-46 189.9 120 79.2
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 1.7e-46 189.5 119 79.0
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 1.9e-45 186.0 120 78.3
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 2.4e-45 185.7 117 77.8
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 2.4e-45 185.7 121 76.9
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 3.2e-45 185.3 117 76.1
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 4.2e-45 184.9 117 76.9
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 4.2e-45 184.9 106 82.1
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 7.1e-45 184.1 119 74.8
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 1.2e-44 183.3 120 74.2
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 6.0e-44 181.0 119 76.5
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 6.0e-44 181.0 118 72.9
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 7.9e-44 180.6 119 73.9
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 1.0e-43 180.3 123 76.4
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 1.0e-43 180.3 118 76.3
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 1.3e-43 179.9 109 79.8
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 1.8e-43 179.5 125 75.2
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 2.3e-43 179.1 116 78.4
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 2.3e-43 179.1 119 73.1
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 3.9e-43 178.3 100 83.0
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 5.1e-43 177.9 117 74.4
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 5.1e-43 177.9 123 72.4
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 8.7e-43 177.2 121 75.2
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 8.7e-43 177.2 121 74.4
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 1.5e-42 176.4 98 83.7
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 1.9e-42 176.0 100 81.0
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 1.9e-42 176.0 122 76.2
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 4.3e-42 174.9 124 74.2
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 5.6e-42 174.5 124 73.4
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 5.6e-42 174.5 124 73.4
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 5.6e-42 174.5 121 72.7
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 7.4e-42 174.1 95 84.2
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 1.6e-41 172.9 121 72.7
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 1.6e-41 172.9 124 72.6
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 1.6e-41 172.9 122 71.3
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 1.6e-41 172.9 124 70.2
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 2.1e-41 172.6 126 70.6
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 2.8e-41 172.2 121 71.9
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 2.8e-41 172.2 130 68.5
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 3.7e-41 171.8 99 81.8
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 4.8e-41 171.4 126 71.4
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 8.1e-41 170.6 118 73.7
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 8.1e-41 170.6 118 73.7
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 8.1e-41 170.6 121 74.4
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 1.1e-40 170.2 121 71.1
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 1.4e-40 169.9 119 72.3
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 1.4e-40 169.9 118 72.9
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 3.1e-40 168.7 119 71.4
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 4.0e-40 168.3 120 70.8
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 4.0e-40 168.3 119 71.4
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 5.3e-40 167.9 86 89.5
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 2.6e-39 165.6 124 68.5
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 2.6e-39 165.6 113 75.2
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 3.4e-39 165.2 108 75.0
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 3.4e-39 165.2 124 67.7
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 4.5e-39 164.9 124 69.4
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 9.9e-39 163.7 101 76.2
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 9.9e-39 163.7 124 69.4
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 1.7e-38 162.9 122 67.2
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 3.8e-38 161.8 105 73.3
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 3.8e-38 161.8 116 73.3
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 4.9e-38 161.4 122 68.0
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 6.4e-38 161.0 88 86.4
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 8.4e-38 160.6 105 72.4
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.4e-37 159.8 125 65.6
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 3.2e-37 158.7 124 64.5
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 5.5e-37 157.9 117 70.1
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 6.0e-36 154.5 85 83.5
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 8.7e-35 150.6 85 81.2
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 2.5e-34 149.1 99 74.7
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 1.7e-30 136.3 86 77.9
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 3.8e-30 135.2 164 48.8
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 2.5e-29 132.5 88 71.6
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 2.1e-28 129.4 87 69.0
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 3.9e-27 125.2 85 69.4
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.6e-25 119.8 99 64.6
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 4.8e-25 118.2 86 70.9
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 1.8e-24 116.3 95 67.4
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 8.5e-22 107.5 77 72.7
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 3.2e-21 105.5 77 71.4
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 7.2e-21 104.4 76 73.7
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 2.1e-20 102.8 82 64.6
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 4.6e-20 101.7 77 67.5
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 1.8e-19 99.8 78 65.4
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 4.3e-18 95.1 97 56.7
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 1.1e-16 90.5 84 63.1
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 1.8e-16 89.7 79 57.0
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 1.7e-14 83.2 45 77.8
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.4e-13 80.1 84 52.4
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 2.5e-13 79.3 45 82.2
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.2e-13 77.8 81 54.3
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 5.3e-08 61.6 91 47.3
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.7e-06 56.6 31 74.2


User provided reference genes

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