Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 6.0e-180 634.0 313 100.0
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.0e-171 606.7 313 95.8
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.2e-117 425.2 298 72.5
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 6.3e-105 384.8 343 63.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.5e-95 352.4 300 61.3
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 5.5e-93 345.1 294 59.5
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.4e-88 330.5 295 58.0
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.1e-88 329.3 298 55.7
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.2e-87 327.4 303 57.1
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.3e-86 323.9 294 56.1
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 8.0e-84 314.7 302 53.3
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 1.0e-83 314.3 306 54.2
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.8e-83 313.5 294 57.8
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 6.8e-83 311.6 308 53.2
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.7e-81 307.0 301 53.2
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.3e-78 297.4 293 53.2
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 5.0e-78 295.4 306 53.6
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 9.5e-77 291.2 297 52.5
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.2e-76 290.8 303 50.2
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.2e-76 290.8 299 51.8
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 3.6e-76 289.3 301 50.2
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.4e-74 282.7 295 52.5
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 5.8e-74 282.0 296 53.4
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.3e-73 280.8 295 51.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.7e-73 280.4 301 50.8
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 6.4e-73 278.5 297 52.2
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 6.4e-73 278.5 298 50.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 8.3e-73 278.1 294 51.0
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.4e-72 277.3 294 49.3
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.4e-72 276.6 293 48.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.2e-72 276.2 297 49.5
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.2e-72 276.2 299 50.2
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 9.2e-72 274.6 299 51.5
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.2e-71 274.2 305 47.9
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.6e-71 273.9 306 49.7
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.0e-70 271.2 299 49.2
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.3e-70 270.8 295 49.8
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 9.5e-69 264.6 296 48.3
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 2.1e-68 263.5 293 49.1
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-68 263.5 293 49.1
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.1e-68 263.5 293 49.5
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.1e-68 263.5 296 49.7
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 2.8e-68 263.1 299 47.2
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 4.7e-68 262.3 295 48.1
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.2e-68 261.9 293 49.1
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-67 260.0 293 48.8
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.3e-67 260.0 300 48.3
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 3.1e-67 259.6 289 46.7
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.0e-67 259.2 299 47.2
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.2e-66 257.7 291 47.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.5e-66 257.3 298 46.0
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.8e-66 255.4 294 47.3
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 5.8e-66 255.4 298 46.3
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.3e-65 254.2 298 50.7
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 1.1e-64 251.1 290 46.6
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.2e-64 249.6 325 44.3
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.1e-64 249.2 295 47.1
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 7.1e-64 248.4 305 49.2
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 6.0e-63 245.4 291 48.8
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.0e-62 244.6 197 61.9
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.7e-62 243.8 303 47.9
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 2.3e-62 243.4 298 44.0
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 5.1e-62 242.3 301 44.5
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 6.6e-62 241.9 303 44.6
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 8.6e-62 241.5 270 49.3
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 1.1e-61 241.1 294 46.6
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 4.3e-61 239.2 302 45.4
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 9.5e-61 238.0 293 46.1
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.2e-60 237.7 257 47.9
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.4e-59 233.4 303 46.5
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 2.2e-57 226.9 292 43.8
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.1e-56 224.6 303 43.9
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 1.1e-56 224.6 208 55.3
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.9e-56 223.8 209 56.5
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 2.7e-55 219.9 333 39.9
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 3.5e-55 219.5 200 56.0
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 6.0e-55 218.8 276 46.4
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 2.5e-53 213.4 291 41.9
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 3.3e-53 213.0 291 41.9
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 3.3e-53 213.0 307 41.4
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 3.1e-51 206.5 289 41.9
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 6.4e-49 198.7 291 40.9
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 8.4e-49 198.4 291 40.9
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.2e-47 194.5 290 40.0
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.7e-47 193.4 292 38.4
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 3.5e-47 193.0 163 59.5
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.6e-45 184.9 230 46.5
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.0e-43 179.5 291 37.8
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 1.2e-42 177.9 191 50.3
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.4e-42 176.4 205 44.9
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 4.6e-39 166.0 221 40.3
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.3e-38 164.5 242 43.0
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 2.5e-37 160.2 311 34.7
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 4.8e-36 156.0 148 56.8
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.4e-35 153.7 305 34.8
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 4.0e-35 152.9 219 41.1
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 6.9e-35 152.1 233 38.6
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 4.5e-34 149.4 234 41.0
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 8.4e-33 145.2 256 35.2
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 3.5e-31 139.8 234 38.5
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.8e-30 137.5 236 37.7
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 6.7e-30 135.6 291 34.7
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 4.3e-29 132.9 203 38.4
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.3e-29 132.9 136 49.3
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 1.3e-28 131.3 179 44.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.8e-28 130.2 303 33.3
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 6.9e-27 125.6 149 44.3
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.6e-26 122.1 262 32.4
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 7.6e-26 122.1 92 64.1
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.0e-25 121.7 106 59.4
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.7e-25 120.9 109 59.6
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 4.9e-25 119.4 226 32.7
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 8.4e-25 118.6 79 77.2
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.1e-24 118.2 345 29.6
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.3e-22 111.3 106 51.9
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.0e-22 110.2 130 49.2
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.3e-21 106.7 57 89.5
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 6.9e-19 99.0 294 28.2
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 5.9e-18 95.9 58 74.1
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.7e-17 94.4 57 77.2
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.7e-17 94.4 58 72.4
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.8e-14 84.3 80 57.5
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.8e-14 84.3 80 57.5
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 1.4e-11 74.7 51 64.7
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.8e-11 74.3 93 44.1
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 4.1e-11 73.2 230 30.4
Lsat_1_v5_gn_8_10160 Lactuca sativa HOM05D006306 ORTHO05D007912 3.6e-07 60.1 286 23.1
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 2.3e-06 57.4 135 26.7


User provided reference genes

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