Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.2e-221 773.1 454 100.0
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.9e-134 483.4 436 68.1
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.1e-131 474.2 436 68.3
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 2.9e-111 406.4 565 54.0
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 2.8e-101 373.2 421 57.0
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.9e-98 363.2 436 54.1
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 3.3e-94 349.7 432 53.7
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 3.1e-92 343.2 437 54.2
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 4.0e-92 342.8 454 55.5
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 1.2e-91 341.3 421 56.8
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 9.8e-91 338.2 458 50.9
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 9.2e-89 331.6 402 54.2
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.9e-86 323.9 420 50.5
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 4.3e-86 322.8 478 48.5
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 7.3e-86 322.0 402 55.5
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.6e-85 320.9 434 55.5
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 3.6e-85 319.7 404 53.2
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.5e-83 314.3 401 55.6
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.6e-83 313.5 426 52.1
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 2.4e-81 307.0 438 49.8
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.4e-81 307.0 419 52.0
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 2.4e-81 307.0 440 53.6
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 9.2e-81 305.1 407 53.1
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.7e-80 303.5 442 53.6
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 4.6e-80 302.8 403 50.1
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 6.0e-80 302.4 524 42.9
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 1.7e-79 300.8 436 52.5
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 2.3e-79 300.4 398 51.8
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 3.0e-79 300.1 458 51.1
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 8.6e-79 298.5 406 48.3
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 4.3e-78 296.2 449 52.1
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 4.3e-78 296.2 427 47.5
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 9.5e-78 295.0 434 49.8
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.6e-77 294.3 416 49.8
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.8e-77 293.5 440 53.2
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.1e-76 291.6 434 48.4
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 6.8e-76 288.9 495 43.8
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 2.0e-75 287.3 436 47.9
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 2.0e-75 287.3 422 51.2
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 3.4e-75 286.6 410 46.8
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 4.4e-75 286.2 427 49.6
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 3.8e-74 283.1 419 49.6
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.8e-74 283.1 454 50.2
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.9e-73 280.8 408 51.7
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 3.2e-73 280.0 445 45.8
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 5.4e-73 279.3 428 45.8
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 2.1e-72 277.3 430 45.6
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.9e-70 270.8 409 50.4
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 3.3e-70 270.0 361 51.2
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 7.3e-70 268.9 449 49.7
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 9.6e-70 268.5 408 50.2
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 4.7e-69 266.2 450 49.3
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 6.2e-69 265.8 422 46.9
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.1e-68 263.5 408 49.3
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 9.9e-67 258.5 423 46.8
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 9.9e-67 258.5 423 46.1
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 1.1e-65 255.0 408 42.9
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.4e-65 252.7 457 41.1
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 7.1e-65 252.3 402 48.3
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 4.6e-64 249.6 331 52.0
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 3.9e-63 246.5 419 46.1
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 5.1e-63 246.1 409 44.0
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 6.6e-63 245.7 419 46.3
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 8.7e-63 245.4 418 42.6
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.8e-61 240.4 404 45.8
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 3.6e-61 240.0 421 46.8
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 2.4e-60 237.3 438 44.7
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 5.3e-60 236.1 413 42.4
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 4.5e-59 233.0 401 42.1
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.7e-58 231.1 416 43.3
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 6.4e-58 229.2 433 43.9
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 2.4e-57 227.3 416 43.0
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 7.1e-57 225.7 411 44.5
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.7e-56 223.8 435 41.1
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 6.0e-56 222.6 414 41.1
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.9e-54 217.6 414 40.6
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.3e-53 214.9 401 41.9
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-53 214.9 432 43.1
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 2.8e-53 213.8 418 42.6
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.4e-52 211.5 439 39.4
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.4e-52 211.5 332 44.6
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 9.0e-52 208.8 429 38.2
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 1.5e-51 208.0 433 38.3
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 2.0e-51 207.6 407 39.6
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.7e-50 204.5 220 60.5
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 8.4e-50 202.2 409 39.6
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 3.2e-49 200.3 370 38.9
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.5e-48 196.8 370 41.1
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.0e-47 195.3 414 37.4
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.3e-47 194.9 403 39.7
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 1.8e-47 194.5 275 47.3
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 5.1e-47 193.0 447 40.9
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.9e-46 191.0 436 37.4
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.9e-46 191.0 407 38.8
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 3.3e-46 190.3 427 37.5
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 4.3e-46 189.9 422 41.0
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.3e-46 189.9 446 35.9
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.3e-45 188.3 436 37.2
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 1.6e-45 188.0 406 37.9
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.8e-45 187.2 407 36.1
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 3.7e-45 186.8 410 38.5
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 6.2e-45 186.0 442 36.4
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 8.2e-45 185.7 367 40.1
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 3.1e-44 183.7 406 36.9
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 4.5e-43 179.9 359 44.3
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 7.6e-43 179.1 280 48.2
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.0e-42 178.7 427 36.1
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.7e-42 177.9 413 35.8
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.7e-42 177.9 428 36.0
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 2.1e-40 171.0 425 34.6
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.2e-35 155.2 196 49.0
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.1e-30 138.7 422 32.7
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.3e-26 125.2 334 35.9
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 7.2e-25 119.4 203 44.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 3.0e-23 114.0 286 36.0
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 3.3e-22 110.5 243 37.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.7e-21 108.2 332 30.7
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 5.9e-19 99.8 431 28.1
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.3e-18 98.6 94 59.6
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.1e-17 95.5 72 62.5
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 6.7e-15 86.3 403 28.0
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 8.8e-15 85.9 184 41.3
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 8.8e-15 85.9 382 26.4
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 1.1e-14 85.5 76 55.3
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.6e-14 84.3 439 28.5
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 5.3e-12 76.6 76 55.3
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.6e-11 74.3 96 50.0
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 4.5e-11 73.6 384 30.5
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.2e-10 71.2 82 45.1
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 2.2e-10 71.2 223 30.9
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 6.5e-10 69.7 75 45.3
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 2.5e-09 67.8 366 30.9
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.7e-08 64.3 83 45.8
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.1e-08 63.2 83 44.6
arahy.Tifrunner.gnm1.ann1.F65TCR Arachis hypogaea HOM05D005355 ORTHO05D006591 1.4e-07 62.0 41 68.3
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 5.2e-07 60.1 143 33.6


User provided reference genes

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