Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.3e-107 391.0 188 100.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 6.8e-70 267.7 202 72.3
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.8e-54 216.5 201 58.7
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.2e-52 209.5 202 57.9
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.7e-52 208.8 204 58.8
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 3.7e-52 208.8 209 57.4
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.4e-51 206.1 210 58.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 5.4e-51 204.9 205 56.6
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.5e-50 202.2 211 54.0
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.6e-47 193.4 231 49.4
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.8e-47 192.6 194 54.6
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.6e-47 192.2 209 56.9
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-46 190.7 208 54.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.8e-46 189.9 213 50.7
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-46 189.5 205 53.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.3e-46 189.5 205 53.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.0e-46 188.7 205 54.6
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.0e-46 188.7 232 50.0
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 4.4e-45 185.3 209 49.3
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 7.5e-45 184.5 206 53.4
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 9.8e-45 184.1 212 53.3
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.7e-44 183.3 212 51.9
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.7e-44 183.3 195 51.3
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.9e-44 182.6 195 51.3
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.9e-44 182.6 205 51.7
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.7e-44 182.2 210 50.5
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.9e-44 181.8 203 51.7
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 4.9e-44 181.8 195 50.3
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 8.3e-44 181.0 211 49.8
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.9e-43 179.9 213 49.3
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.2e-43 179.1 195 50.8
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 5.4e-43 178.3 193 49.7
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.5e-42 175.6 176 55.1
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 7.8e-42 174.5 214 49.1
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 3.9e-41 172.2 210 48.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 5.0e-41 171.8 173 53.2
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.6e-41 171.4 215 47.9
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 7.3e-40 167.9 210 49.0
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.5e-40 167.5 207 48.3
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 9.5e-40 167.5 197 46.7
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.2e-39 167.2 219 49.8
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-39 166.8 216 46.8
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.6e-39 166.8 197 46.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.6e-39 166.8 223 46.6
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.8e-39 166.0 192 48.4
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.2e-39 164.9 207 47.3
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.2e-39 164.9 207 47.8
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 8.1e-39 164.5 160 58.8
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.1e-39 164.5 216 45.8
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 8.1e-39 164.5 196 46.9
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.3e-38 162.9 210 48.1
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.3e-38 162.9 184 50.5
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 6.8e-38 161.4 197 49.7
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.8e-38 161.4 201 52.2
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 8.9e-38 161.0 198 48.0
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.2e-37 160.6 173 54.3
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.0e-37 159.8 187 51.3
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 4.4e-37 158.7 201 43.3
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 4.4e-37 158.7 201 46.8
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 5.8e-37 158.3 200 48.5
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 7.5e-37 157.9 193 46.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 9.9e-37 157.5 190 51.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.7e-36 156.8 211 44.1
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.9e-36 156.0 223 48.0
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 6.4e-36 154.8 197 47.2
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 8.3e-36 154.5 192 45.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.3e-36 154.5 205 47.3
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.9e-35 153.3 192 45.3
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.4e-35 152.9 204 47.5
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.1e-34 149.8 218 45.4
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.5e-34 149.1 208 46.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 3.5e-34 149.1 211 43.1
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.6e-34 148.7 208 46.2
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 7.8e-34 147.9 224 42.4
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.0e-33 147.5 206 46.6
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.0e-33 146.0 251 41.4
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.9e-33 145.6 220 42.3
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 6.6e-33 144.8 200 43.5
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.1e-32 144.1 215 44.2
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.5e-32 143.7 206 47.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.9e-32 143.3 200 44.5
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.3e-32 142.5 236 43.6
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 5.6e-32 141.7 181 45.9
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 5.6e-32 141.7 202 44.6
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.5e-32 141.0 206 45.1
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-31 140.2 204 44.6
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.1e-31 139.8 204 44.1
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 3.6e-31 139.0 204 44.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 3.6e-31 139.0 204 44.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 3.6e-31 139.0 204 44.1
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 4.7e-31 138.7 209 45.5
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.7e-31 138.7 213 41.8
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 8.1e-31 137.9 204 44.1
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.1e-30 137.5 201 44.3
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 3.1e-30 136.0 242 41.3
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.0e-30 135.6 208 43.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.8e-30 134.8 204 41.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 6.8e-30 134.8 201 42.3
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 8.9e-30 134.4 206 42.2
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 8.9e-30 134.4 206 42.2
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 8.9e-30 134.4 206 42.2
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-29 132.9 206 42.2
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.6e-29 132.9 206 42.2
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 4.4e-29 132.1 215 40.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 5.8e-29 131.7 202 42.1
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 7.6e-29 131.3 207 43.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 7.6e-29 131.3 210 42.9
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 7.6e-29 131.3 210 42.9
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 9.9e-29 131.0 205 42.0
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 9.9e-29 131.0 205 42.0
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.3e-28 130.6 195 43.1
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.3e-28 130.6 198 41.9
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.7e-28 130.2 205 42.4
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.9e-28 129.4 206 42.2
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 4.9e-28 128.6 215 39.1
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 6.4e-28 128.3 206 42.7
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 6.4e-28 128.3 206 42.7
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 6.4e-28 128.3 206 42.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.4e-27 127.1 163 42.9
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.9e-27 126.7 184 43.5
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-27 126.3 160 44.4
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 5.4e-27 125.2 214 39.7
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.1e-27 124.8 170 42.4
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 9.2e-27 124.4 202 43.1
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 9.2e-27 124.4 200 43.0
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-26 124.0 184 41.8
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 3.5e-26 122.5 195 41.5
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 9.6e-24 114.4 186 40.3
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.2e-23 114.0 189 38.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.6e-23 113.6 182 40.1
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.6e-23 112.5 181 38.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.1e-22 110.9 167 44.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.8e-22 110.2 247 34.4
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 2.4e-22 109.8 182 39.6
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 9.0e-22 107.8 189 38.6
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 4.4e-21 105.5 187 39.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 5.8e-21 105.1 257 33.1
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.2e-20 103.2 149 43.0
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.9e-20 102.1 185 37.8
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 6.4e-20 101.7 181 40.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.9e-19 100.1 195 37.4
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.3e-19 97.8 194 35.1
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 3.5e-18 95.9 98 49.0
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 6.0e-18 95.1 100 50.0
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.1e-16 90.9 203 36.0
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.9e-16 90.1 220 33.6
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.8e-15 86.3 159 37.1
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.6e-15 85.9 166 38.0
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 6.2e-15 85.1 130 44.6
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.1e-14 84.3 82 57.3
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.1e-14 82.8 169 36.1
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 3.1e-14 82.8 112 43.8
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 6.9e-14 81.6 119 42.0
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.9e-14 81.6 127 37.0
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.5e-13 80.5 208 31.2
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-13 80.1 160 35.0
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-13 80.1 160 35.0
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-13 79.7 160 35.0
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.6e-13 79.7 160 34.4
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.6e-13 79.7 160 35.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 4.5e-13 79.0 139 38.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.9e-13 77.8 206 32.5
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 8.4e-12 74.7 92 45.7
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.4e-11 73.9 103 40.8
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.9e-11 73.6 192 32.8
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 5.4e-11 72.0 166 34.3
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.0e-09 66.2 186 31.7
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 3.0e-09 66.2 91 40.7
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.9e-08 63.5 168 32.1
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 3.7e-07 59.3 165 27.9
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 4.0e-06 55.8 75 41.3


User provided reference genes

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