Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 3.5e-61 238.0 114 100.0
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 6.4e-23 110.9 85 70.6
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.7e-20 102.8 116 51.7
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.3e-19 98.2 116 47.4
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 4.8e-18 94.7 110 46.4
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 4.8e-18 94.7 109 49.5
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-17 92.8 100 49.0
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-17 92.8 105 49.5
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 3.1e-17 92.0 108 45.4
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 3.1e-17 92.0 110 45.5
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.9e-17 90.9 116 44.0
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.5e-16 89.7 103 48.5
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 2.0e-16 89.4 91 48.4
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 2.0e-16 89.4 75 56.0
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 3.4e-16 88.6 113 46.0
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 3.4e-16 88.6 103 48.5
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 7.6e-16 87.4 114 45.6
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 8.4e-15 84.0 121 44.6
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.9e-14 82.8 109 45.0
Sopen12g003030 Solanum pennellii HOM05D003277 ORTHO05D003275 2.4e-14 82.4 111 45.0
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 7.1e-14 80.9 92 48.9
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 1.2e-13 80.1 104 42.3
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.6e-13 79.7 111 42.3
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.6e-13 79.7 95 46.3
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.6e-13 79.7 111 41.4
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 1.6e-13 79.7 107 39.3
PGSC0003DMG400000319 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.6e-13 79.7 117 38.5
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 2.1e-13 79.3 111 44.1
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 2.1e-13 79.3 111 44.1
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 2.1e-13 79.3 92 44.6
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 2.1e-13 79.3 114 38.6
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.7e-13 79.0 116 43.1
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 2.7e-13 79.0 94 47.9
Nitab4.5_0011350g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.5e-13 78.6 114 39.5
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 6.0e-13 77.8 115 41.7
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 7.9e-13 77.4 112 42.0
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.0e-12 77.0 76 52.6
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.0e-12 77.0 118 40.7
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 1.3e-12 76.6 111 41.4
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 1.8e-12 76.3 110 41.8
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.8e-12 76.3 107 42.1
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.3e-12 75.9 115 40.0
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.3e-12 75.9 112 41.1
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.3e-12 75.9 107 46.7
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.0e-12 75.5 84 46.4
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.0e-12 75.5 111 41.4
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 3.0e-12 75.5 110 37.3
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 3.0e-12 75.5 116 38.8
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 3.9e-12 75.1 106 49.1
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.9e-12 75.1 92 44.6
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 3.9e-12 75.1 105 41.9
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 3.9e-12 75.1 112 42.9
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 6.7e-12 74.3 112 41.1
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 8.7e-12 73.9 116 40.5
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 8.7e-12 73.9 116 40.5
Lsat_1_v5_gn_8_93781 Lactuca sativa HOM05D000750 ORTHO05D000714 8.7e-12 73.9 105 40.0
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-11 73.6 112 41.1
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.9e-11 72.8 98 41.8
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.9e-11 72.8 112 42.0
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.5e-11 72.4 115 41.7
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.5e-11 72.4 67 56.7
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.5e-11 72.4 110 41.8
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.3e-11 72.0 75 46.7
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.3e-11 72.0 116 38.8
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.3e-11 72.0 110 40.9
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 3.3e-11 72.0 103 43.7
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.3e-11 71.6 116 39.7
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 4.3e-11 71.6 109 36.7
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 4.3e-11 71.6 115 41.7
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 4.3e-11 71.6 68 51.5
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 4.3e-11 71.6 110 40.9
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.6e-11 71.2 70 54.3
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.6e-11 71.2 108 44.4
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.6e-10 69.7 105 40.0
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.6e-10 69.7 73 50.7
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 1.6e-10 69.7 99 43.4
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.1e-10 69.3 79 46.8
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 2.8e-10 68.9 70 54.3
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.8e-10 68.9 115 40.0
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.8e-10 68.2 106 38.7
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 8.1e-10 67.4 82 48.8
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 1.1e-09 67.0 109 37.6
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 1.1e-09 67.0 70 54.3
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 1.1e-09 67.0 113 38.1
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 1.1e-09 67.0 73 46.6
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 1.4e-09 66.6 69 49.3
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.4e-09 66.6 107 41.1
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 1.4e-09 66.6 104 38.5
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.4e-09 66.6 115 39.1
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.8e-09 66.2 110 38.2
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.8e-09 66.2 100 42.0
Lsat_1_v5_gn_7_40601 Lactuca sativa HOM05D003277 ORTHO05D003275 2.4e-09 65.9 84 46.4
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 2.4e-09 65.9 74 44.6
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.1e-09 65.5 102 40.2
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.1e-09 65.5 95 41.1
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 3.1e-09 65.5 76 44.7
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 3.1e-09 65.5 78 43.6
Rhsim12G0198400 Rhododendron simsii HOM05D000062 ORTHO05D014675 3.1e-09 65.5 109 37.6
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 4.0e-09 65.1 90 41.1
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 4.0e-09 65.1 100 42.0
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.0e-09 65.1 70 47.1
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 4.0e-09 65.1 107 36.4
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 5.3e-09 64.7 109 36.7
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 6.9e-09 64.3 78 50.0
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 6.9e-09 64.3 84 44.0
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 9.0e-09 63.9 114 38.6
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 9.0e-09 63.9 86 41.9
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 9.0e-09 63.9 105 35.2
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 1.2e-08 63.5 68 51.5
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 1.2e-08 63.5 99 39.4
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 1.5e-08 63.2 101 42.6
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.5e-08 63.2 65 55.4
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.0e-08 62.8 66 48.5
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 2.0e-08 62.8 106 36.8
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 2.0e-08 62.8 115 38.3
COL.COLO4_26960 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.6e-08 62.4 88 44.3
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 2.6e-08 62.4 97 37.1
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 3.4e-08 62.0 73 47.9
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 4.5e-08 61.6 76 48.7
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 4.5e-08 61.6 94 36.2
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 4.5e-08 61.6 95 35.8
Sc18g0001140 Simmondsia chinensis HOM05D003277 ORTHO05D003275 4.5e-08 61.6 88 43.2
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 5.8e-08 61.2 70 44.3
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 5.8e-08 61.2 70 44.3
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 5.8e-08 61.2 70 50.0
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 7.6e-08 60.8 98 40.8
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 7.6e-08 60.8 89 41.6
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 7.6e-08 60.8 88 40.9
Nitab4.5_0011350g0020 Nicotiana tabacum HOM05D003277 ORTHO05D003275 9.9e-08 60.5 61 50.8
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.2e-07 59.3 106 39.6
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 2.2e-07 59.3 76 39.5
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.2e-07 59.3 76 39.5
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.2e-07 59.3 76 39.5
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.2e-07 59.3 70 45.7
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.2e-07 59.3 70 45.7
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.2e-07 59.3 118 35.6
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 2.2e-07 59.3 43 62.8
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 2.9e-07 58.9 65 46.2
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 2.9e-07 58.9 114 34.2
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 3.8e-07 58.5 106 39.6
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 3.8e-07 58.5 75 45.3
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.8e-07 58.5 76 39.5
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.9e-07 58.2 72 48.6
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 4.9e-07 58.2 72 48.6
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 4.9e-07 58.2 99 38.4
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.9e-07 58.2 70 44.3
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 4.9e-07 58.2 75 44.0
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 6.4e-07 57.8 98 36.7
EL10Ac8g18510 Beta vulgaris HOM05D003277 ORTHO05D003275 6.4e-07 57.8 113 38.9
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 6.4e-07 57.8 71 43.7
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 1.4e-06 56.6 74 45.9
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.4e-06 55.8 70 45.7
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.4e-06 55.8 70 45.7
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.4e-06 55.8 70 45.7
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 2.4e-06 55.8 97 35.1
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.2e-06 55.5 73 41.1
Sc08g0007380 Simmondsia chinensis HOM05D003277 ORTHO05D003275 3.2e-06 55.5 75 42.7
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 3.2e-06 55.5 82 40.2
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 4.2e-06 55.1 78 41.0
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.5e-06 54.7 78 42.3
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.1e-06 54.3 78 42.3
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 7.1e-06 54.3 73 41.1
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 7.1e-06 54.3 76 42.1
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 9.3e-06 53.9 65 46.2
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 9.3e-06 53.9 78 42.3
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 9.3e-06 53.9 64 45.3
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 9.3e-06 53.9 72 44.4


User provided reference genes

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