Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 2.2e-45 185.3 92 100.0
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 3.4e-14 81.6 88 51.1
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 2.2e-13 79.0 80 53.8
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 6.3e-13 77.4 75 57.3
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 8.3e-13 77.0 76 61.8
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 1.8e-12 75.9 81 55.6
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 1.8e-12 75.9 81 55.6
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 3.1e-12 75.1 78 59.0
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 5.4e-12 74.3 76 55.3
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 5.4e-12 74.3 76 55.3
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 5.4e-12 74.3 76 55.3
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 7.0e-12 73.9 79 55.7
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 7.0e-12 73.9 80 55.0
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 9.2e-12 73.6 80 52.5
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 9.2e-12 73.6 73 60.3
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 2.7e-11 72.0 80 56.2
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 5.9e-11 70.9 67 55.2
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 7.8e-11 70.5 80 55.0
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.0e-10 70.1 75 53.3
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 1.0e-10 70.1 73 54.8
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 1.7e-10 69.3 78 50.0
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 1.7e-10 69.3 77 55.8
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 1.7e-10 69.3 65 53.8
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 2.9e-10 68.6 75 52.0
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 2.9e-10 68.6 78 55.1
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 5.0e-10 67.8 82 51.2
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 5.0e-10 67.8 75 52.0
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 6.6e-10 67.4 77 55.8
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 1.1e-09 66.6 84 48.8
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 1.1e-09 66.6 73 54.8
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 1.9e-09 65.9 68 52.9
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 1.9e-09 65.9 73 52.1
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 2.5e-09 65.5 59 57.6
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 4.3e-09 64.7 74 52.7
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 4.3e-09 64.7 78 47.4
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 4.3e-09 64.7 74 51.4
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 5.6e-09 64.3 77 49.4
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 5.6e-09 64.3 63 58.7
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 7.3e-09 63.9 58 56.9
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 7.3e-09 63.9 79 48.1
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 7.3e-09 63.9 80 46.2
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 9.5e-09 63.5 68 54.4
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 9.5e-09 63.5 74 47.3
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 1.2e-08 63.2 85 49.4
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 1.6e-08 62.8 59 55.9
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 1.6e-08 62.8 73 50.7
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 2.8e-08 62.0 67 52.2
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 2.8e-08 62.0 58 56.9
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 2.8e-08 62.0 69 47.8
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 3.6e-08 61.6 71 47.9
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 3.6e-08 61.6 59 54.2
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 4.7e-08 61.2 66 50.0
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 6.1e-08 60.8 84 44.0
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 8.0e-08 60.5 99 40.4
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 8.0e-08 60.5 61 52.5
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 8.0e-08 60.5 61 55.7
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 1.0e-07 60.1 72 48.6
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 1.4e-07 59.7 76 44.7
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 1.8e-07 59.3 67 50.7
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 2.3e-07 58.9 35 74.3
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 4.0e-07 58.2 66 53.0
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 8.9e-07 57.0 59 54.2
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 1.2e-06 56.6 67 47.8
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 2.6e-06 55.5 46 65.2
CsaV3_1G030530 Cucumis sativus L. HOM05D008067 ORTHO05D010226 5.7e-06 54.3 85 41.2
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 9.8e-06 53.5 63 47.6


User provided reference genes

Program Settings