Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.5e-73 280.0 211 100.0
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.5e-73 280.0 211 100.0
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 4.9e-53 211.8 210 74.8
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.4e-52 210.3 210 73.3
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 1.9e-52 209.9 263 61.2
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 2.1e-51 206.5 210 72.4
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 6.2e-48 194.9 207 71.5
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 8.2e-48 194.5 209 70.3
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 2.4e-47 193.0 209 66.5
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 6.9e-47 191.4 210 66.2
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 6.9e-47 191.4 210 65.7
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 2.6e-46 189.5 206 69.4
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 2.6e-46 189.5 209 77.5
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 7.6e-46 188.0 209 67.9
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.0e-45 187.6 209 67.0
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.2e-45 186.4 211 69.2
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 2.2e-45 186.4 209 64.1
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 8.4e-45 184.5 207 71.0
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 8.4e-45 184.5 207 71.0
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 8.4e-45 184.5 208 70.7
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 8.4e-45 184.5 210 67.6
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 1.1e-44 184.1 210 61.0
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.1e-44 184.1 210 70.0
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.5e-44 183.0 236 62.7
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 3.2e-44 182.6 208 68.8
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 4.2e-44 182.2 209 67.0
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.1e-44 181.4 210 58.1
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 9.3e-44 181.0 206 67.0
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 7.9e-43 177.9 210 66.7
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 2.3e-42 176.4 210 65.2
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.5e-41 173.7 175 75.4
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 4.3e-41 172.2 210 64.8
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 7.4e-41 171.4 217 64.1
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.3e-40 170.6 207 63.8
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.6e-40 170.2 211 64.5
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 2.2e-40 169.9 211 64.5
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.8e-40 169.5 215 65.6
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.7e-40 169.1 209 65.6
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 8.2e-40 167.9 207 66.2
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 1.1e-39 167.5 210 63.3
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 1.1e-39 167.5 210 63.3
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.1e-39 167.5 210 65.2
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 1.4e-39 167.2 171 75.4
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.4e-39 167.2 210 62.4
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.8e-39 166.8 210 65.7
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.8e-39 166.8 210 65.7
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 1.8e-39 166.8 210 64.8
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.4e-39 166.4 209 65.1
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.1e-39 166.0 210 65.2
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 3.1e-39 166.0 210 68.6
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 3.1e-39 166.0 210 62.9
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 4.1e-39 165.6 207 64.7
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 5.3e-39 165.2 210 62.9
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 5.3e-39 165.2 207 64.3
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 9.0e-39 164.5 208 46.2
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 9.0e-39 164.5 210 63.3
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.2e-38 164.1 210 65.2
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.2e-38 164.1 210 63.3
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 5.9e-38 161.8 208 45.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 5.9e-38 161.8 175 73.7
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.9e-38 161.8 175 73.7
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 5.9e-38 161.8 171 73.7
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.0e-37 161.0 210 61.0
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.7e-37 160.2 151 69.5
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 2.2e-37 159.8 228 61.0
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 2.2e-37 159.8 187 67.9
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.2e-37 159.8 176 72.2
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 3.8e-37 159.1 173 71.7
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 3.8e-37 159.1 210 62.9
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 3.8e-37 159.1 210 61.9
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 5.0e-37 158.7 206 64.1
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 5.0e-37 158.7 213 58.2
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 5.0e-37 158.7 206 63.6
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 6.5e-37 158.3 171 66.1
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 6.5e-37 158.3 210 64.8
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 8.5e-37 157.9 171 50.3
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 8.5e-37 157.9 222 59.5
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 8.5e-37 157.9 206 63.6
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 1.1e-36 157.5 208 44.2
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 1.1e-36 157.5 208 44.2
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.4e-36 157.1 206 53.9
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.5e-36 156.4 174 71.3
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 7.2e-36 154.8 208 58.2
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 9.4e-36 154.5 207 58.9
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 2.1e-35 153.3 212 61.8
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.1e-35 153.3 171 66.1
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 3.6e-35 152.5 206 57.3
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 7.9e-35 151.4 170 71.2
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 7.9e-35 151.4 173 69.9
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.0e-34 151.0 195 65.1
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.4e-34 150.6 171 64.3
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.4e-34 150.6 202 63.4
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.3e-34 149.8 206 60.7
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.9e-34 149.1 173 69.4
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.5e-33 147.1 211 60.2
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 211 60.2
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 2.5e-33 146.4 209 58.9
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 4.3e-33 145.6 170 70.6
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 5.7e-33 145.2 208 55.3
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.7e-33 145.2 169 71.6
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 5.7e-33 145.2 209 56.5
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.7e-32 143.7 206 47.1
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.7e-32 142.5 209 58.4
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 1.8e-31 140.2 170 67.1
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 2.4e-31 139.8 190 63.7
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 3.1e-31 139.4 169 54.4
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.5e-30 137.1 162 70.4
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 1.5e-30 137.1 207 60.4
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.0e-30 136.7 210 49.0
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 3.4e-30 136.0 187 50.8
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 5.0e-29 132.1 170 52.4
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 6.5e-29 131.7 139 79.9
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.2e-28 128.3 171 55.6
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 1.2e-27 127.5 205 56.1
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 3.9e-26 122.5 216 36.6
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 6.7e-26 121.7 200 46.5
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.7e-26 121.7 207 52.2
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-24 116.7 157 62.4
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-24 116.7 157 62.4
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 2.2e-24 116.7 157 62.4
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 2.2e-24 116.7 157 62.4
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 1.1e-23 114.4 189 46.6
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 3.1e-23 112.8 161 62.1
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 3.1e-23 112.8 161 62.1
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.0e-21 107.8 140 69.3
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-21 106.7 216 35.2
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-21 106.7 216 35.2
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 3.8e-21 105.9 138 54.3
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 5.0e-21 105.5 141 66.0
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 2.5e-20 103.2 216 34.7
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 4.2e-20 102.4 216 34.7
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.2e-20 102.4 141 71.6
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.2e-20 101.7 148 68.2
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 6.1e-19 98.6 176 53.4
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.0e-18 97.8 140 50.7
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.8e-16 89.7 74 55.4
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.3e-16 88.6 141 54.6
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 1.1e-15 87.8 166 56.6
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 4.1e-15 85.9 174 40.8
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.6e-14 84.0 167 35.9
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 2.9e-13 79.7 81 75.3
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.9e-12 77.0 93 51.6
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.1e-11 73.6 118 53.4
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 1.5e-09 67.4 113 52.2
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 5.7e-09 65.5 149 35.6
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 7.5e-09 65.1 66 53.0
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 3.1e-07 59.7 58 50.0
ATR0329G069 Amborella trichopoda HOM05D005036 ORTHO05D005881 3.5e-06 56.2 146 30.8


User provided reference genes

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