Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0067100 Rhododendron simsii HOM05D067762 ORTHO05D338693 2.5e-241 838.6 483 100.0
RhsimUnG0003700 Rhododendron simsii HOM05D067762 ORTHO05D339185 2.5e-44 184.1 156 84.6
Actinidia30817 Actinidia chinensis HOM05D001083 ORTHO05D001637 4.8e-11 73.6 98 51.0
CSS0007953 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D001637 8.2e-11 72.8 67 61.2
CSS0042788 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D001637 8.2e-11 72.8 67 61.2
Rhsim06G0073500 Rhododendron simsii HOM05D001083 ORTHO05D001637 1.8e-10 71.6 67 64.2
vmacro21322 Vaccinium macrocarpon HOM05D001083 ORTHO05D001637 9.1e-10 69.3 95 50.5
Dinv42628 Davidia involucrata HOM05D001083 ORTHO05D001637 2.6e-09 67.8 97 45.4
Actinidia10374 Actinidia chinensis HOM05D001083 ORTHO05D001637 3.4e-09 67.4 92 46.7
CSS0041566 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D001637 5.9e-09 66.6 51 68.6
Dinv44843 Davidia involucrata HOM05D001083 ORTHO05D001637 7.7e-09 66.2 97 44.3
Sopen04g030070 Solanum pennellii HOM05D001083 ORTHO05D001637 2.9e-08 64.3 95 44.2
Rhsim09G0097800 Rhododendron simsii HOM05D004067 ORTHO05D004827 5.0e-08 63.5 41 78.0
QL09p017299 Quercus lobata HOM05D001083 ORTHO05D001637 6.5e-08 63.2 41 75.6
DCAR_019306 Daucus carota HOM05D001083 ORTHO05D001637 8.5e-08 62.8 95 44.2
GSVIVG01009148001 Vitis vinifera HOM05D001083 ORTHO05D001637 8.5e-08 62.8 70 55.7
Nitab4.5_0001211g0120 Nicotiana tabacum HOM05D000084 ORTHO05D002355 1.4e-07 62.0 29 89.7
Nitab4.5_0002756g0080 Nicotiana tabacum HOM05D000084 ORTHO05D002355 1.4e-07 62.0 29 89.7
CAN.G479.53 Capsicum annuum HOM05D000084 ORTHO05D002355 1.9e-07 61.6 29 86.2
Rhsim08G0150700 Rhododendron simsii HOM05D000084 ORTHO05D002355 1.9e-07 61.6 29 93.1
Solyc03g115660.3 Solanum lycopersicum HOM05D000084 ORTHO05D002355 1.9e-07 61.6 29 86.2
Sopen03g034650 Solanum pennellii HOM05D000084 ORTHO05D002355 1.9e-07 61.6 29 86.2
PGSC0003DMG400024559 Solanum tuberosum HOM05D000084 ORTHO05D002355 1.9e-07 61.6 29 86.2
vmacro17579 Vaccinium macrocarpon HOM05D000084 ORTHO05D002355 1.9e-07 61.6 29 93.1
Glyma.17G102900 Glycine max HOM05D000084 ORTHO05D002355 2.5e-07 61.2 29 89.7
Lalb_Chr12g0197021 Lupinus albus HOM05D000084 ORTHO05D002355 2.5e-07 61.2 29 89.7
Phvul.003G187700 Phaseolus vulgaris HOM05D000084 ORTHO05D002355 2.5e-07 61.2 29 89.7
VMungo1215G1504 Vigna mungo HOM05D000084 ORTHO05D002355 2.5e-07 61.2 29 89.7
Lalb_Chr13g0303051 Lupinus albus HOM05D000084 ORTHO05D002355 3.2e-07 60.8 29 89.7
Glyma.05G024400 Glycine max HOM05D000084 ORTHO05D002355 4.2e-07 60.5 29 86.2
Lj9A468T57 Lonicera japonica HOM05D000084 ORTHO05D002355 4.2e-07 60.5 29 89.7
Peaxi162Scf00274g00119 Petunia axillaris HOM05D000084 ORTHO05D002355 4.2e-07 60.5 29 89.7
arahy.Tifrunner.gnm1.ann1.XZ331S Arachis hypogaea HOM05D000084 ORTHO05D002355 5.5e-07 60.1 29 86.2
Haze_07656 Corylus avellana HOM05D000084 ORTHO05D002355 5.5e-07 60.1 29 86.2
Dinv10663 Davidia involucrata HOM05D000084 ORTHO05D002355 5.5e-07 60.1 29 89.7
Dinv38753 Davidia involucrata HOM05D000084 ORTHO05D002355 5.5e-07 60.1 29 89.7
Oeu047271.2 Olea europaea HOM05D000084 ORTHO05D002355 5.5e-07 60.1 29 89.7
CSS0031451 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002355 7.2e-07 59.7 29 86.2
MD06G1198100 Malus domestica HOM05D000084 ORTHO05D002355 7.2e-07 59.7 29 86.2
MD14G1205700 Malus domestica HOM05D000084 ORTHO05D002355 7.2e-07 59.7 29 86.2
Medtr4g109090 Medicago truncatula HOM05D000084 ORTHO05D002355 7.2e-07 59.7 29 86.2
Psat4g048800 Pisum sativum HOM05D000084 ORTHO05D002355 7.2e-07 59.7 29 86.2
RcHm_v2.0_Chr7g0182181 Rosa chinensis HOM05D000084 ORTHO05D002355 7.2e-07 59.7 29 86.2
MSTRG.11364 Avicennia marina HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 86.2
CSS0037843 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 82.8
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 9.4e-07 59.3 64 53.1
Haze_22336 Corylus avellana HOM05D001083 ORTHO05D001637 9.4e-07 59.3 64 53.1
MELO3C002003.2 Cucumis melo HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 86.2
CsaV3_1G005720 Cucumis sativus L. HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 86.2
Hma1.2p1_0060F.1_g033440 Hydrangea macrophylla HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 86.2
Lj4C734T9 Lonicera japonica HOM05D001083 ORTHO05D001637 9.4e-07 59.3 67 50.7
Peaxi162Scf00106g00514 Petunia axillaris HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 82.8
Sed0023315 Sechium edule HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 86.2
Sed0024578 Sechium edule HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 86.2
SGA_v2.0_scaffold313G48322 Striga asiatica HOM05D000084 ORTHO05D002355 9.4e-07 59.3 29 89.7
Actinidia04861 Actinidia chinensis HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 86.2
ATR0730G122 Amborella trichopoda HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 89.7
AT3G05050 Arabidopsis thaliana HOM05D000084 ORTHO05D000363 1.2e-06 58.9 29 82.8
arahy.Tifrunner.gnm1.ann1.GXY79M Arachis hypogaea HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
Carub.0003s0430 Capsella rubella HOM05D000084 ORTHO05D000363 1.2e-06 58.9 29 82.8
CARHR079380 Cardamine hirsuta HOM05D000084 ORTHO05D000363 1.2e-06 58.9 29 82.8
CiPaw.12G011500 Carya illinoinensis HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
Cc04_g14330 Coffea canephora HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 86.2
ECA246G2821 Erigeron canadensis HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
HanXRQChr10g0318551 Helianthus annuus HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
Lsat_1_v5_gn_1_13860 Lactuca sativa HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
Nitab4.5_0000131g0450 Nicotiana tabacum HOM05D001083 ORTHO05D001637 1.2e-06 58.9 67 52.2
Oeu052463.1 Olea europaea HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 86.2
PGR083G1953 Punica granatum HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
QL10p017952 Quercus lobata HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
Rhsim06G0113600 Rhododendron simsii HOM05D001083 ORTHO05D340169 1.2e-06 58.9 38 73.7
Rhsim10G0035300 Rhododendron simsii HOM05D000084 ORTHO05D002355 1.2e-06 58.9 30 76.7
Sc04g0002920 Simmondsia chinensis HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 82.8
THA.LOC104802820 Tarenaya hassleriana HOM05D000084 ORTHO05D000363 1.2e-06 58.9 29 82.8
TAR629G2796 Trochodendron aralioides HOM05D000084 ORTHO05D002355 1.2e-06 58.9 29 86.2
Atru.chr9.305 Acer truncatum HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 79.3
Ca_21803_v3 Cicer arietinum L. HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 86.2
ClCG04G012050 Citrullus lanatus HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
FvH4_5g14470 Fragaria vesca HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
FAN08G3225 Fragaria x ananassa HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
FAN13G0189 Fragaria x ananassa HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
FAN18G4015 Fragaria x ananassa HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
Gohir.A03G067900 Gossypium hirsutum HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 79.3
Gohir.D03G094400 Gossypium hirsutum HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 79.3
Gorai.003G098600 Gossypium raimondii HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 79.3
Lj4g0000178 Lotus japonicus HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
Manes.02G146300 Manihot esculenta HOM05D001083 ORTHO05D001637 1.6e-06 58.5 66 54.5
Nn4g23298 Nelumbo nucifera HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
Prupe.5G199000 Prunus persica HOM05D000084 ORTHO05D002355 1.6e-06 58.5 29 82.8
Solyc04g076100.4 Solanum lycopersicum HOM05D001083 ORTHO05D001637 1.6e-06 58.5 67 50.7
CSS0036485 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002355 2.1e-06 58.2 31 74.2
Migut.I00222 Erythranthe guttata HOM05D000084 ORTHO05D002355 2.1e-06 58.2 29 86.2
Eucgr.B00551 Eucalyptus grandis HOM05D000084 ORTHO05D002355 2.1e-06 58.2 29 79.3
Manes.14G082300 Manihot esculenta HOM05D000084 ORTHO05D002355 2.1e-06 58.2 29 79.3
Hund09836 Selenicereus undatus HOM05D000084 ORTHO05D002355 2.1e-06 58.2 29 82.8
GSVIVG01007956001 Vitis vinifera HOM05D000084 ORTHO05D002355 2.1e-06 58.2 29 86.2
Aa31LG11G8880 Aethionema arabicum HOM05D000084 ORTHO05D000363 2.7e-06 57.8 29 79.3
AL3G15440 Arabidopsis lyrata HOM05D000084 ORTHO05D000363 2.7e-06 57.8 29 79.3
CiPaw.11G048000 Carya illinoinensis HOM05D000084 ORTHO05D002355 2.7e-06 57.8 29 79.3
AUR62008470 Chenopodium quinoa HOM05D000084 ORTHO05D002355 2.7e-06 57.8 29 79.3
AUR62021623 Chenopodium quinoa HOM05D000084 ORTHO05D002355 2.7e-06 57.8 29 79.3
DCAR_026033 Daucus carota HOM05D000084 ORTHO05D002355 2.7e-06 57.8 29 86.2
PSO063G3605 Papaver somniferum HOM05D000084 ORTHO05D011099 2.7e-06 57.8 29 82.8
PSO478G1209 Papaver somniferum HOM05D000084 ORTHO05D002355 2.7e-06 57.8 29 82.8
PSO832G2153 Papaver somniferum HOM05D000084 ORTHO05D011099 2.7e-06 57.8 29 82.8
TWI81G0133 Tripterygium wilfordii HOM05D000084 ORTHO05D002355 2.7e-06 57.8 29 75.9
Actinidia01956 Actinidia chinensis HOM05D000084 ORTHO05D002355 3.6e-06 57.4 30 73.3
Actinidia06109 Actinidia chinensis HOM05D000084 ORTHO05D002355 3.6e-06 57.4 30 73.3
Actinidia37605 Actinidia chinensis HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 79.3
BcaNung04266 Brassica carinata HOM05D000084 ORTHO05D003791 3.6e-06 57.4 29 79.3
A06p37720 Brassica napus HOM05D000084 ORTHO05D000363 3.6e-06 57.4 29 79.3
C07p40510 Brassica napus HOM05D000084 ORTHO05D000363 3.6e-06 57.4 29 79.3
BolC7t44587H Brassica oleracea HOM05D000084 ORTHO05D000363 3.6e-06 57.4 29 79.3
BraA06t26691Z Brassica rapa HOM05D000084 ORTHO05D000363 3.6e-06 57.4 29 79.3
CANSAT80G1751 Cannabis sativa HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 79.3
CiPaw.07G167400 Carya illinoinensis HOM05D001083 ORTHO05D001637 3.6e-06 57.4 78 47.4
COL.COLO4_35590 Corchorus olitorius HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 79.3
Duzib068G0036 Durio zibethinus HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 79.3
ECA247G2521 Erigeron canadensis HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 79.3
Glyma.05G202000 Glycine max HOM05D000084 ORTHO05D000363 3.6e-06 57.4 28 85.7
Glyma.08G009400 Glycine max HOM05D000084 ORTHO05D000363 3.6e-06 57.4 28 85.7
Gohir.A09G242800 Gossypium hirsutum HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 75.9
Gohir.D09G243500 Gossypium hirsutum HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 75.9
Gorai.006G267300 Gossypium raimondii HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 75.9
Lj4g0024043 Lotus japonicus HOM05D000084 ORTHO05D000363 3.6e-06 57.4 28 85.7
Manes.06G124000 Manihot esculenta HOM05D000084 ORTHO05D000363 3.6e-06 57.4 30 76.7
PSO017G3693 Papaver somniferum HOM05D000084 ORTHO05D011099 3.6e-06 57.4 29 82.8
PSO210G0104 Papaver somniferum HOM05D000084 ORTHO05D011099 3.6e-06 57.4 31 74.2
PSO384G3593 Papaver somniferum HOM05D000084 ORTHO05D011099 3.6e-06 57.4 29 82.8
Sp2g20410 Schrenkiella parvula HOM05D000084 ORTHO05D000363 3.6e-06 57.4 29 79.3
Thecc.04G088500 Theobroma cacao HOM05D000084 ORTHO05D002355 3.6e-06 57.4 29 82.8
Ah.02g113810 Amaranthus hybridus HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
EL10Ac5g11070 Beta vulgaris HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
BcaB04g21373 Brassica carinata HOM05D000084 ORTHO05D000363 4.7e-06 57.0 29 79.3
BcaC09g47820 Brassica carinata HOM05D000084 ORTHO05D000363 4.7e-06 57.0 29 79.3
BNapus_Darmor_BZH_scaffold_114p00300 Brassica napus HOM05D000084 ORTHO05D000363 4.7e-06 57.0 29 79.3
BolC1t05714H Brassica oleracea HOM05D000084 ORTHO05D000363 4.7e-06 57.0 29 79.3
BraSC132t45521Z Brassica rapa HOM05D000084 ORTHO05D000363 4.7e-06 57.0 29 79.3
CAN.G206.182 Capsicum annuum HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
Duzib084G1048 Durio zibethinus HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
Duzib205G1782 Durio zibethinus HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
Manes.01G100500 Manihot esculenta HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 79.3
Nitab4.5_0008485g0010 Nicotiana tabacum HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 79.3
PSO063G0712 Papaver somniferum HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 82.8
PSO063G6448 Papaver somniferum HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 82.8
Sp3g03880 Schrenkiella parvula HOM05D000084 ORTHO05D000363 4.7e-06 57.0 29 79.3
Solyc02g088330.2 Solanum lycopersicum HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
Sopen02g033020 Solanum pennellii HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
Thecc.03G094900 Theobroma cacao HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 75.9
TAR371G0658 Trochodendron aralioides HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 82.8
TAR374G0194 Trochodendron aralioides HOM05D000084 ORTHO05D002355 4.7e-06 57.0 29 82.8
VMungo0251G2611 Vigna mungo HOM05D000084 ORTHO05D000363 4.7e-06 57.0 28 82.1
BcaC05g24514 Brassica carinata HOM05D000084 ORTHO05D014869 6.1e-06 56.6 28 82.1
BcaNung07374 Brassica carinata HOM05D000084 ORTHO05D000363 6.1e-06 56.6 28 82.1
C05p02090 Brassica napus HOM05D000084 ORTHO05D014869 6.1e-06 56.6 28 82.1
BolC5t28986H Brassica oleracea HOM05D000084 ORTHO05D014869 6.1e-06 56.6 28 82.1
CARHR067590 Cardamine hirsuta HOM05D000084 ORTHO05D002355 6.1e-06 56.6 29 79.3
Thhalv10003166m.g Eutrema salsugineum HOM05D000084 ORTHO05D011681 6.1e-06 56.6 28 85.7
Thhalv10020353m.g Eutrema salsugineum HOM05D000084 ORTHO05D000363 6.1e-06 56.6 29 79.3
Gohir.D09G011400 Gossypium hirsutum HOM05D000084 ORTHO05D002355 6.1e-06 56.6 29 82.8
HanXRQChr02g0041751 Helianthus annuus HOM05D000084 ORTHO05D002355 6.1e-06 56.6 29 79.3
Peaxi162Scf00281g00321 Petunia axillaris HOM05D001083 ORTHO05D001637 6.1e-06 56.6 82 42.7
HPP92_015886 Vanilla planifolia HOM05D000084 ORTHO05D002355 6.1e-06 56.6 29 79.3
HPP92_015900 Vanilla planifolia HOM05D000084 ORTHO05D002355 6.1e-06 56.6 29 79.3
BcaB07g30536 Brassica carinata HOM05D000084 ORTHO05D011681 7.9e-06 56.2 28 85.7
BcaC05g29990 Brassica carinata HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
BcaC05g29991 Brassica carinata HOM05D000084 ORTHO05D000363 7.9e-06 56.2 29 75.9
C02p42590 Brassica napus HOM05D000084 ORTHO05D011099 7.9e-06 56.2 28 75.0
C05p62170 Brassica napus HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
BolC2t10296H Brassica oleracea HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 75.0
BolC5t34875H Brassica oleracea HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
CSS0033037 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D002355 7.9e-06 56.2 29 82.8
CSS0047261 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000363 7.9e-06 56.2 31 71.0
CARHR079370 Cardamine hirsuta HOM05D000084 ORTHO05D000363 7.9e-06 56.2 29 75.9
Cpa.g.sc13.302 Carica papaya HOM05D000084 ORTHO05D002355 7.9e-06 56.2 29 79.3
Cpa.g.sc4.126 Carica papaya HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
Cfa018733 Carpinus fangiana HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
CiPaw.11G002700 Carya illinoinensis HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
Haze_07126 Corylus avellana HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
Thhalv10006913m.g Eutrema salsugineum HOM05D000084 ORTHO05D014869 7.9e-06 56.2 28 82.1
Lj1g0014942 Lotus japonicus HOM05D000084 ORTHO05D002355 7.9e-06 56.2 29 75.9
Nitab4.5_0001637g0120 Nicotiana tabacum HOM05D000084 ORTHO05D002355 7.9e-06 56.2 29 72.4
QL10p001135 Quercus lobata HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
SalBow1G4892 Salvia bowleyana HOM05D000084 ORTHO05D002355 7.9e-06 56.2 29 72.4
Sp1g02600 Schrenkiella parvula HOM05D000084 ORTHO05D014869 7.9e-06 56.2 28 82.1
Hund17560 Selenicereus undatus HOM05D000084 ORTHO05D000363 7.9e-06 56.2 28 82.1
VMungo0540G0308 Vigna mungo HOM05D000084 ORTHO05D000363 7.9e-06 56.2 29 79.3


User provided reference genes

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