Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-181 639.8 322 100.0
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 3.8e-153 545.0 344 82.0
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.1e-152 543.5 322 85.7
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.9e-152 542.7 388 76.0
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.7e-142 509.6 322 80.4
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 7.3e-141 504.2 323 81.4
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.9e-128 463.0 318 74.8
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.9e-128 463.0 318 74.8
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.1e-125 453.8 314 73.2
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.5e-125 452.6 349 70.8
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 4.3e-125 451.8 320 73.8
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.3e-124 450.3 349 70.5
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 2.8e-124 449.1 315 72.4
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.1e-123 447.2 291 76.6
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.1e-123 447.2 322 71.4
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.1e-123 447.2 324 72.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 6.9e-123 444.5 319 72.4
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.2e-122 443.7 317 72.6
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 4.5e-122 441.8 321 69.8
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.0e-121 440.7 307 73.0
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.7e-121 439.9 307 73.3
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.8e-121 438.7 322 69.6
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 5.0e-121 438.3 321 69.8
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 5.0e-121 438.3 286 76.2
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 5.0e-121 438.3 293 75.4
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 6.5e-121 438.0 274 78.8
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 6.5e-121 438.0 290 75.5
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 8.4e-121 437.6 322 70.5
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 8.4e-121 437.6 285 76.1
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.9e-120 436.4 322 70.2
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.9e-120 436.4 285 76.8
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 5.5e-120 434.9 277 77.3
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.5e-120 434.9 297 74.4
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 7.2e-120 434.5 290 74.8
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 9.3e-120 434.1 291 74.6
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.2e-119 433.7 285 75.4
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.2e-119 433.7 322 68.3
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.7e-119 432.6 290 74.8
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 4.6e-119 431.8 273 77.7
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.1e-119 431.4 322 70.2
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 7.9e-119 431.0 291 74.6
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 7.9e-119 431.0 326 69.9
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 7.9e-119 431.0 316 70.6
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.0e-118 430.6 274 78.5
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.8e-118 429.9 313 70.3
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 2.3e-118 429.5 324 70.1
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.3e-118 429.5 324 69.8
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 5.1e-118 428.3 323 68.7
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 8.7e-118 427.6 320 69.4
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.1e-117 427.2 314 69.4
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.5e-117 426.8 326 69.0
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.9e-117 426.4 269 77.7
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.5e-117 426.0 323 69.7
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.5e-117 426.0 318 68.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.3e-117 425.2 322 67.4
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 4.3e-117 425.2 318 68.9
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 5.7e-117 424.9 321 67.9
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 4.8e-116 421.8 316 68.7
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 4.8e-116 421.8 316 68.7
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 6.3e-116 421.4 315 67.3
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 6.3e-116 421.4 329 67.2
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.1e-115 420.6 313 69.6
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.1e-115 420.6 317 68.8
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.8e-115 419.9 350 65.4
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.8e-115 419.9 316 68.7
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 2.4e-115 419.5 314 69.7
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 2.4e-115 419.5 308 68.2
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.4e-115 419.5 309 68.3
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 5.3e-115 418.3 317 67.8
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.2e-114 417.2 314 68.5
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.5e-114 416.8 307 69.1
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.0e-114 416.4 352 64.8
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 2.6e-114 416.0 274 76.3
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 3.4e-114 415.6 292 70.5
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 5.9e-114 414.8 319 68.0
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 5.9e-114 414.8 307 68.7
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 7.7e-114 414.5 279 73.5
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 2.2e-113 412.9 292 71.6
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.2e-113 412.9 307 68.1
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 5.0e-113 411.8 319 67.7
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 6.5e-113 411.4 311 68.8
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 2.5e-112 409.5 307 69.4
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 5.5e-112 408.3 279 73.8
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 3.6e-111 405.6 307 69.1
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 3.6e-111 405.6 308 68.8
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 3.6e-111 405.6 259 78.4
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.0e-110 404.1 306 68.3
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.5e-109 400.2 319 64.6
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.7e-108 396.7 264 74.6
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.1e-107 392.1 267 71.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.5e-106 390.2 266 72.2
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-104 384.0 324 66.0
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 3.2e-104 382.5 304 64.1
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 9.4e-104 380.9 255 73.3
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 3.6e-103 379.0 237 78.9
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.4e-102 377.1 292 64.4
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 2.3e-102 376.3 267 72.3
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.3e-102 376.3 275 68.0
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.0e-102 375.9 302 64.6
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 5.1e-102 375.2 291 67.7
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 5.1e-102 375.2 255 73.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.7e-100 370.2 277 67.5
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.2e-98 364.0 318 62.6
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 2.0e-98 363.2 287 62.4
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.0e-97 360.9 240 73.8
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 8.5e-97 357.8 295 63.4
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 2.3e-94 349.7 289 60.2
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 4.0e-94 349.0 272 64.7
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 6.7e-94 348.2 301 62.1
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 8.8e-94 347.8 266 67.7
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.1e-91 340.9 249 75.5
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.4e-91 340.5 279 60.6
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 4.5e-90 335.5 257 67.3
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.7e-90 334.7 265 63.0
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 4.2e-88 328.9 262 66.0
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 9.4e-88 327.8 265 64.2
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.4e-85 319.3 326 56.1
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.8e-83 313.5 269 57.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.8e-83 313.5 189 84.7
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.8e-83 313.5 247 67.6
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.4e-83 313.2 294 60.2
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 2.7e-82 309.7 268 60.4
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 6.5e-81 305.1 188 79.8
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 9.4e-80 301.2 274 55.8
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 2.2e-76 290.0 177 79.7
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.2e-74 284.3 280 54.6
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 1.3e-65 254.2 154 80.5
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.5e-64 250.0 184 70.7
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 4.7e-63 245.7 182 67.6
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.6e-58 230.7 176 65.9
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.0e-58 230.3 138 81.9
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.7e-52 209.5 266 43.6
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 4.1e-51 206.1 121 83.5
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 4.1e-51 206.1 121 83.5
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 6.0e-50 202.2 150 69.3
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 7.8e-50 201.8 119 81.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 7.8e-50 201.8 119 81.5
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 3.9e-49 199.5 168 62.5
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 8.4e-44 181.8 128 71.1
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.4e-38 164.5 109 74.3
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.4e-35 154.5 142 56.3
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 7.1e-35 152.1 285 37.2
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 7.8e-34 148.7 132 58.3
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.3e-32 143.3 132 51.5
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.3e-31 141.4 179 46.4
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 2.8e-31 140.2 88 76.1
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 9.0e-30 135.2 88 70.5
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 2.0e-29 134.0 88 72.7
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 5.8e-29 132.5 199 40.2
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.3e-28 131.3 116 58.6
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.6e-26 124.4 77 81.8
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.0e-25 121.7 70 82.9
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-23 114.8 106 60.4
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.1e-23 114.0 66 84.8
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 5.3e-22 109.4 72 76.4
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.9e-22 109.0 70 82.9
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.6e-18 97.8 197 37.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 3.5e-18 96.7 55 83.6
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 3.5e-18 96.7 55 83.6
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 9.0e-14 82.0 46 80.4


User provided reference genes

Program Settings