Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 0.0e+00 1285.4 636 100.0
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 0.0e+00 1218.4 658 93.0
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 0.0e+00 1093.6 662 83.8
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 3.2e-297 1024.6 590 87.3
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.7e-296 1021.5 671 76.5
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 2.4e-292 1008.4 668 76.3
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 7.2e-273 943.7 667 71.4
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.8e-255 885.9 670 66.4
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.6e-230 802.4 673 61.1
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 9.2e-228 793.9 661 61.4
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 1.3e-221 773.5 667 60.1
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.9e-220 769.6 635 63.0
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 2.5e-217 759.2 661 59.5
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 6.2e-216 754.6 667 57.4
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 1.4e-215 753.4 656 59.3
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.8e-215 753.1 666 59.2
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 3.1e-215 752.3 668 57.9
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 9.8e-214 747.3 671 56.2
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 3.5e-211 738.8 663 58.5
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 8.6e-210 734.2 668 57.2
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 1.1e-209 733.8 667 56.7
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.5e-209 732.6 664 58.0
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 7.3e-209 731.1 667 54.9
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 7.3e-209 731.1 661 55.7
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 9.5e-209 730.7 667 54.6
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.6e-208 728.8 647 59.5
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 4.7e-208 728.4 655 58.8
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 3.4e-206 722.2 664 58.3
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 3.4e-206 722.2 669 54.1
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 9.9e-206 720.7 668 57.0
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 4.9e-205 718.4 683 55.2
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 7.8e-203 711.1 668 56.6
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.0e-202 710.7 454 81.7
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 1.7e-202 709.9 661 55.5
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 2.3e-202 709.5 663 55.8
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.5e-201 706.8 668 56.6
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.9e-201 706.4 625 58.7
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 1.6e-200 703.4 684 55.1
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 2.8e-200 702.6 665 55.2
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 8.1e-200 701.0 626 57.2
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 1.4e-199 700.3 665 54.9
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 2.6e-198 696.0 661 54.9
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 9.9e-198 694.1 653 55.4
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 6.4e-197 691.4 669 52.5
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 8.4e-197 691.0 634 56.6
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 2.7e-195 686.0 661 56.1
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.1e-193 680.6 664 52.9
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.5e-193 680.2 666 55.6
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.8e-191 673.3 676 52.1
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 3.4e-190 669.1 760 48.4
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.6e-190 667.9 638 56.3
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.3e-189 667.2 638 56.1
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 1.3e-189 667.2 665 51.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 1.7e-189 666.8 662 54.8
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 2.2e-189 666.4 647 56.7
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 8.4e-189 664.5 670 51.8
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 3.2e-188 662.5 664 52.7
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 2.1e-187 659.8 663 51.4
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 1.0e-186 657.5 665 51.3
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 4.3e-185 652.1 713 49.8
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 1.1e-183 647.5 664 52.6
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.4e-183 647.1 660 54.2
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 2.4e-183 646.4 660 52.4
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.2e-182 644.0 664 51.5
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.3e-181 640.6 647 53.3
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 8.4e-181 637.9 652 52.3
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.1e-180 637.5 669 51.4
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 3.2e-180 636.0 665 53.1
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 2.3e-178 629.8 673 49.9
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 8.7e-178 627.9 666 49.5
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 5.6e-177 625.2 658 51.1
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 4.9e-173 612.1 658 48.9
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.4e-172 610.5 670 50.0
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.4e-172 610.5 674 50.7
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.6e-171 607.1 650 47.8
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 3.9e-170 602.4 657 49.6
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 5.1e-170 602.1 660 49.4
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 2.8e-168 596.3 657 49.2
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 2.8e-168 596.3 678 49.9
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 4.8e-168 595.5 658 46.8
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.2e-166 590.9 672 48.4
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 2.2e-165 586.6 687 47.2
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.1e-164 584.3 659 49.0
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 3.2e-164 582.8 648 48.8
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 4.6e-163 578.9 649 49.3
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 5.3e-159 565.5 661 47.5
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.7e-157 560.5 671 46.2
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 2.9e-157 559.7 656 47.0
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 6.5e-157 558.5 624 48.9
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.5e-156 555.4 373 74.8
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 6.7e-154 548.5 670 43.6
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.0e-153 547.0 665 45.1
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 6.3e-152 542.0 663 46.8
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.4e-151 540.8 654 46.5
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 4.1e-151 539.3 705 44.4
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.1e-143 514.6 624 44.9
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.1e-143 514.6 574 49.1
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 1.0e-138 498.0 530 51.1
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 7.5e-137 491.9 648 42.7
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 4.7e-131 472.6 463 53.6
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.8e-127 460.7 725 37.9
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 3.0e-122 443.4 475 50.9
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 2.6e-121 440.3 474 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 5.7e-121 439.1 721 38.3
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 7.5e-121 438.7 635 39.7
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.0e-117 428.3 649 38.8
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.6e-115 421.0 698 37.8
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 3.6e-115 419.9 632 39.2
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.3e-108 395.6 452 50.4
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 7.0e-103 379.0 764 33.9
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 4.0e-98 363.2 282 64.2
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 5.2e-98 362.8 384 50.5
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 7.1e-95 352.4 263 63.5
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 6.6e-93 345.9 571 37.5
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.1e-84 318.5 353 47.3
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.8e-83 313.9 268 56.7
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.2e-73 282.0 208 61.5
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.1e-63 248.8 247 53.8
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 2.1e-62 244.6 379 37.2
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.8e-59 234.2 117 91.5
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 2.6e-57 227.6 288 43.8
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.5e-32 143.3 88 81.8
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.4e-31 142.1 103 66.0
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.4e-31 142.1 154 48.7
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.7e-24 118.6 158 45.6
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.8e-24 117.5 127 48.0
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 3.6e-22 110.9 134 45.5
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 8.0e-22 109.8 132 47.0
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 6.7e-21 106.7 154 44.8
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 2.3e-13 81.6 75 53.3
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.7e-11 75.5 59 61.0
Eucgr.F01010 Eucalyptus grandis HOM05D000783 ORTHO05D000705 5.5e-07 60.5 68 47.1
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 1.2e-06 59.3 43 60.5


User provided reference genes

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