Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.2e-53 211.5 105 100.0
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.0e-51 206.5 102 100.0
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.2e-46 188.7 104 91.3
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 2.2e-30 135.6 101 69.3
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.8e-30 134.8 103 68.0
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.7e-28 128.6 105 61.0
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 5.2e-27 124.4 100 59.0
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.0e-26 122.5 101 58.4
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 2.6e-26 122.1 100 58.0
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.7e-25 119.4 101 58.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 1.7e-25 119.4 98 59.2
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 4.8e-25 117.9 99 54.5
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 4.8e-25 117.9 99 56.6
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.1e-24 116.7 101 56.4
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.4e-24 116.3 100 56.0
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.4e-24 115.5 96 57.3
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.4e-24 115.5 96 57.3
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.4e-24 115.5 98 59.2
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.1e-24 115.2 96 57.3
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.3e-24 114.4 99 54.5
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 7.0e-24 114.0 96 56.2
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.0e-24 114.0 96 56.2
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.1e-24 113.6 99 55.6
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 9.1e-24 113.6 99 54.5
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.2e-23 113.2 95 57.9
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.2e-23 113.2 94 61.7
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.6e-23 112.8 96 57.3
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.0e-23 112.5 94 58.5
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.0e-23 112.5 107 53.3
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.3e-22 109.8 95 56.8
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 2.2e-22 109.0 105 55.2
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.9e-22 108.6 94 55.3
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 3.8e-22 108.2 100 54.0
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.8e-22 108.2 103 54.4
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 5.0e-22 107.8 97 58.8
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.1e-21 106.7 101 52.5
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.9e-21 105.9 101 50.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.5e-21 105.5 96 52.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.5e-21 105.5 105 57.1
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.2e-21 104.8 96 52.1
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.2e-21 104.8 105 57.1
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 5.5e-21 104.4 102 48.0
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 7.2e-21 104.0 101 51.5
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 7.2e-21 104.0 96 52.1
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 7.2e-21 104.0 99 58.6
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 7.2e-21 104.0 102 55.9
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.2e-20 103.2 100 51.0
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.2e-20 103.2 102 48.0
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.2e-20 103.2 108 50.0
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.2e-20 103.2 96 52.1
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 1.6e-20 102.8 104 53.8
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.1e-20 102.4 104 51.9
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 2.7e-20 102.1 112 54.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 3.6e-20 101.7 100 52.0
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.6e-20 101.7 96 51.0
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 4.7e-20 101.3 102 49.0
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 8.0e-20 100.5 104 51.9
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.0e-19 100.1 102 54.9
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.0e-19 100.1 102 54.9
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.8e-19 99.4 110 52.7
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.3e-19 99.0 107 53.3
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.3e-19 99.0 107 53.3
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 3.0e-19 98.6 108 52.8
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 3.0e-19 98.6 105 52.4
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 8.8e-19 97.1 106 51.9
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.2e-18 96.7 107 52.3
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.2e-18 96.7 107 52.3
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.5e-18 96.3 108 52.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.5e-18 96.3 107 51.4
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 1.5e-18 96.3 98 53.1
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.5e-18 96.3 112 50.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.6e-18 95.5 101 54.5
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.6e-18 95.5 112 50.9
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 4.4e-18 94.7 106 49.1
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 5.7e-18 94.4 95 51.6
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 7.5e-18 94.0 101 49.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 7.5e-18 94.0 100 48.0
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 9.8e-18 93.6 108 51.9
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 9.8e-18 93.6 105 49.5
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 9.8e-18 93.6 97 50.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.2e-17 92.4 102 51.0
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.2e-17 92.4 94 51.1
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.8e-17 92.0 96 51.0
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 3.7e-17 91.7 104 48.1
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.8e-17 91.3 94 52.1
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 6.3e-17 90.9 101 43.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 8.3e-17 90.5 109 48.6
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.4e-16 89.7 102 51.0
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.4e-16 89.7 108 51.9
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.4e-16 89.7 96 46.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 3.1e-16 88.6 105 48.6
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 4.1e-16 88.2 102 47.1
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 5.4e-16 87.8 92 54.3
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 7.0e-16 87.4 112 44.6
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 7.0e-16 87.4 96 45.8
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.2e-15 86.7 102 51.0
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.2e-15 86.7 97 43.3
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.6e-15 86.3 101 49.5
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 2.0e-15 85.9 104 51.9
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.0e-15 85.9 112 44.6
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 2.0e-15 85.9 112 44.6
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.7e-15 85.5 98 44.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 2.7e-15 85.5 93 48.4
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 2.7e-15 85.5 108 47.2
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.5e-15 85.1 97 49.5
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 4.5e-15 84.7 123 45.5
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 4.5e-15 84.7 102 45.1
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.7e-14 82.8 102 43.1
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.2e-14 82.4 89 51.7
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 5.0e-14 81.3 111 45.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.5e-14 80.9 102 46.1
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.1e-13 80.1 106 43.4
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.9e-13 79.3 105 46.7
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.2e-12 76.6 103 47.6
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 2.7e-12 75.5 103 46.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 8.0e-12 73.9 89 48.3
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 8.0e-12 73.9 94 44.7
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 6.8e-11 70.9 101 43.6
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 2.6e-10 68.9 102 43.1
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.3e-09 66.6 112 42.0
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.7e-09 66.2 104 40.4
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.8e-08 62.8 105 40.0
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 3.1e-08 62.0 102 42.2
Hma1.2p1_0434F.1_g152190 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.8e-06 55.1 40 70.0


User provided reference genes

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