Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 0.0e+00 1216.1 608 100.0
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 0.0e+00 1086.2 608 91.0
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 1.4e-220 770.0 606 69.8
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 4.2e-198 695.3 591 63.5
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 4.4e-171 605.5 591 55.8
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 5.4e-169 598.6 610 56.2
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 1.1e-166 590.9 582 54.1
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 4.3e-166 589.0 611 54.3
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 5.6e-166 588.6 587 54.9
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 1.6e-165 587.0 588 53.9
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 3.6e-165 585.9 588 55.4
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 4.7e-165 585.5 589 53.8
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 8.1e-165 584.7 588 53.4
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 1.7e-162 577.0 613 53.2
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 5.4e-161 572.0 584 53.6
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 2.1e-160 570.1 589 54.2
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 1.3e-159 567.4 614 52.8
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 1.1e-158 564.3 590 52.7
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 1.1e-156 557.8 591 52.8
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 3.1e-156 556.2 590 51.5
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 9.0e-156 554.7 619 51.7
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 7.6e-155 551.6 584 53.3
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.0e-151 541.2 619 50.9
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 1.7e-151 540.4 589 50.3
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 2.5e-150 536.6 588 50.7
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 4.5e-147 525.8 610 48.9
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 2.9e-146 523.1 587 49.6
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 1.4e-145 520.8 593 50.3
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 1.6e-144 517.3 630 47.6
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 1.8e-143 513.8 586 46.9
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.0e-143 513.1 567 51.5
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 8.7e-143 511.5 569 50.1
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 8.7e-143 511.5 597 49.9
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 5.6e-142 508.8 587 46.8
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 1.3e-141 507.7 588 50.0
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 1.8e-140 503.8 607 47.9
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 1.5e-139 500.7 587 50.8
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 1.5e-139 500.7 591 49.1
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 4.2e-137 492.7 602 48.5
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 7.1e-137 491.9 593 48.1
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 1.6e-136 490.7 595 47.2
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 2.3e-135 486.9 592 47.3
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 2.3e-135 486.9 582 47.9
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 1.1e-134 484.6 591 47.9
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 9.6e-134 481.5 477 56.4
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 9.6e-134 481.5 587 48.0
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.3e-133 481.1 592 47.1
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 1.6e-133 480.7 616 46.6
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 3.7e-133 479.6 611 46.6
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.1e-132 478.0 616 46.4
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 1.1e-132 478.0 619 45.7
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 4.5e-131 472.6 569 45.7
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 1.7e-130 470.7 611 43.9
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 2.2e-130 470.3 594 46.0
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 5.5e-129 465.7 586 47.1
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 1.6e-128 464.2 372 64.8
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 4.6e-128 462.6 585 47.5
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 4.6e-128 462.6 604 46.0
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 6.7e-127 458.8 592 45.8
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 1.3e-125 454.5 588 46.4
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 4.8e-125 452.6 602 47.3
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 6.3e-125 452.2 588 46.3
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.8e-124 450.7 589 44.1
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 6.9e-124 448.7 581 44.8
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 2.0e-123 447.2 591 44.2
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 7.6e-123 445.3 623 44.3
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 2.7e-120 436.8 565 44.4
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 1.3e-117 427.9 576 42.7
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 4.2e-113 412.9 563 44.6
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 9.4e-113 411.8 505 46.9
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.2e-112 411.4 563 44.4
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 2.7e-112 410.2 345 62.9
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 3.9e-111 406.4 603 42.3
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 1.1e-110 404.8 581 42.9
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.4e-108 397.9 559 44.2
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 1.8e-108 397.5 581 41.3
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 1.5e-107 394.4 407 56.3
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 5.9e-107 392.5 498 45.6
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 5.9e-107 392.5 502 44.4
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 3.1e-100 370.2 589 40.7
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 4.1e-100 369.8 592 39.2
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 5.9e-99 365.9 659 39.6
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 2.2e-93 347.4 593 40.1
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 1.3e-90 338.2 359 52.9
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 1.1e-89 335.1 324 54.9
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 5.4e-84 316.2 614 36.5
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 1.2e-83 315.1 214 74.8
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 7.5e-78 295.8 289 57.4
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 1.0e-66 258.8 584 33.6
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 6.8e-63 246.1 294 50.7
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 3.9e-58 230.3 517 31.7
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 3.0e-42 177.6 196 49.0
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 4.2e-36 157.1 167 52.7
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 1.8e-26 125.2 215 40.5
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 9.9e-22 109.4 74 68.9
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 4.9e-21 107.1 134 47.8
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 8.4e-21 106.3 138 42.0
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.4e-20 105.5 173 39.9
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.4e-20 105.5 173 39.9
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 1.6e-19 102.1 152 40.1
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 2.7e-19 101.3 280 27.5
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 1.9e-17 95.1 72 65.3
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 5.6e-17 93.6 108 47.2
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 8.2e-16 89.7 168 37.5
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 1.1e-15 89.4 162 35.8
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 9.0e-15 86.3 141 35.5
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 2.0e-14 85.1 58 69.0
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 6.1e-11 73.6 65 60.0
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 1.3e-10 72.4 237 30.4
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 1.8e-10 72.0 237 31.6
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 2.3e-10 71.6 240 30.8
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 3.0e-10 71.2 74 50.0
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 3.9e-10 70.9 251 30.3
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 3.3e-09 67.8 243 30.0
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 1.3e-08 65.9 244 29.9
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 1.3e-08 65.9 242 28.9
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 2.2e-08 65.1 237 30.0
unitig_8.g3057 Utricularia gibba HOM05D003769 ORTHO05D004521 2.8e-08 64.7 240 28.3
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 8.2e-08 63.2 244 29.1
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 1.8e-07 62.0 240 28.3
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 1.2e-06 59.3 237 29.1
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 1.2e-06 59.3 240 27.5
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 1.5e-06 58.9 237 26.2
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 2.6e-06 58.2 237 26.6
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 2.6e-06 58.2 237 27.4
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 3.4e-06 57.8 267 27.7
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 3.4e-06 57.8 237 27.0
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 3.4e-06 57.8 237 27.0
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 3.4e-06 57.8 237 27.0
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 3.4e-06 57.8 237 27.0
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 3.4e-06 57.8 242 26.9
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 4.5e-06 57.4 237 27.0
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 4.5e-06 57.4 240 26.7
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 4.5e-06 57.4 242 26.9
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 5.9e-06 57.0 242 26.9
Psat7g009720 Pisum sativum HOM05D003769 ORTHO05D004521 5.9e-06 57.0 242 27.3
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 7.7e-06 56.6 291 26.8
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 7.7e-06 56.6 296 24.7
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 7.7e-06 56.6 242 26.9
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 7.7e-06 56.6 242 26.9
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 7.7e-06 56.6 242 28.1
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 1.0e-05 56.2 238 27.7


User provided reference genes

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