Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0049900 Rhododendron simsii HOM05D001861 ORTHO05D001868 3.5e-127 458.4 243 100.0
Rhsim09G0135500 Rhododendron simsii HOM05D001861 ORTHO05D001868 2.9e-97 359.0 262 79.4
Rhsim09G0135100 Rhododendron simsii HOM05D001861 ORTHO05D001868 2.4e-96 355.9 261 78.5
RhsimUnG0083600 Rhododendron simsii HOM05D001861 ORTHO05D001868 1.0e-94 350.5 262 77.1
RhsimUnG0155600 Rhododendron simsii HOM05D001861 ORTHO05D001868 2.1e-87 326.2 249 77.5
vmacro10373 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 1.0e-62 244.2 259 61.8
Rhsim09G0134700 Rhododendron simsii HOM05D001861 ORTHO05D001868 1.6e-55 220.3 177 71.8
RhsimUnG0050000 Rhododendron simsii HOM05D001861 ORTHO05D001868 1.1e-45 187.6 175 66.3
CSS0044247 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 1.1e-35 154.5 284 44.7
Lj2A44T76 Lonicera japonica HOM05D001861 ORTHO05D001868 1.1e-24 117.9 262 40.1
QL03p029819 Quercus lobata HOM05D001861 ORTHO05D001868 3.0e-22 109.8 285 37.5
TAR362G1165 Trochodendron aralioides HOM05D001861 ORTHO05D001868 4.4e-21 105.9 285 32.3
Actinidia38933 Actinidia chinensis HOM05D001861 ORTHO05D001868 5.7e-21 105.5 180 47.8
TAR365G0301 Trochodendron aralioides HOM05D001861 ORTHO05D001868 1.4e-19 100.9 292 32.9
Hund06903 Selenicereus undatus HOM05D001861 ORTHO05D001868 1.1e-16 91.3 268 35.1
Cc02_g08730 Coffea canephora HOM05D001861 ORTHO05D001868 1.9e-16 90.5 279 33.7
Prupe.6G350800 Prunus persica HOM05D001861 ORTHO05D001868 9.5e-16 88.2 285 36.5
Manes.08G140100 Manihot esculenta HOM05D001861 ORTHO05D001868 1.2e-15 87.8 277 33.2
ClCG11G010520 Citrullus lanatus HOM05D001861 ORTHO05D001868 1.6e-15 87.4 296 32.1
Nitab4.5_0010745g0010 Nicotiana tabacum HOM05D001861 ORTHO05D020309 2.1e-15 87.0 241 35.3
PGR004G2436 Punica granatum HOM05D001861 ORTHO05D001868 2.1e-15 87.0 280 32.9
Cfa006362 Carpinus fangiana HOM05D001861 ORTHO05D001868 2.8e-15 86.7 231 38.1
Haze_04414 Corylus avellana HOM05D001861 ORTHO05D001868 8.0e-15 85.1 232 37.9
Oeu035746.1 Olea europaea HOM05D001861 ORTHO05D001868 8.0e-15 85.1 306 29.7
Peaxi162Scf00155g00022 Petunia axillaris HOM05D001861 ORTHO05D020309 1.0e-14 84.7 229 36.2
Atru.chr2.1000 Acer truncatum HOM05D001861 ORTHO05D001868 1.4e-14 84.3 303 33.0
Manes.13G037900 Manihot esculenta HOM05D001861 ORTHO05D001868 3.1e-14 83.2 281 30.2
Sed0009743 Sechium edule HOM05D001861 ORTHO05D001868 3.1e-14 83.2 275 32.7
GSVIVG01023442001 Vitis vinifera HOM05D001861 ORTHO05D001868 3.1e-14 83.2 228 35.5
Thecc.05G270000 Theobroma cacao HOM05D001861 ORTHO05D001868 5.2e-14 82.4 275 33.5
Sc20g0000700 Simmondsia chinensis HOM05D001861 ORTHO05D001868 8.9e-14 81.6 226 37.2
ECA238G0949 Erigeron canadensis HOM05D001861 ORTHO05D001868 1.2e-13 81.3 265 33.2
Nn1g02913 Nelumbo nucifera HOM05D001861 ORTHO05D001868 1.5e-13 80.9 258 30.6
TAR633G1161 Trochodendron aralioides HOM05D001861 ORTHO05D001868 1.5e-13 80.9 293 31.1
Nitab4.5_0000091g0480 Nicotiana tabacum HOM05D001861 ORTHO05D020309 2.6e-13 80.1 206 38.8
vmacro02703 Vaccinium macrocarpon HOM05D001861 ORTHO05D001868 2.6e-13 80.1 274 30.7
Ah.04g163160 Amaranthus hybridus HOM05D001861 ORTHO05D001868 4.4e-13 79.3 267 34.1
CsaV3_2G009870 Cucumis sativus L. HOM05D001861 ORTHO05D001868 4.4e-13 79.3 285 31.6
Duzib177G0739 Durio zibethinus HOM05D001861 ORTHO05D001868 5.8e-13 79.0 284 32.7
HanXRQChr14g0454241 Helianthus annuus HOM05D001861 ORTHO05D001868 3.7e-12 76.3 282 31.6
HanXRQChr14g0455311 Helianthus annuus HOM05D001861 ORTHO05D001868 3.7e-12 76.3 282 31.6
EL10Ac4g08993 Beta vulgaris HOM05D001861 ORTHO05D001868 4.9e-12 75.9 279 31.9
COL.COLO4_08951 Corchorus olitorius HOM05D001861 ORTHO05D001868 8.3e-12 75.1 271 32.1
Glyma.19G247800 Glycine max HOM05D001861 ORTHO05D001868 1.4e-11 74.3 167 38.3
MSTRG.21470 Avicennia marina HOM05D001861 ORTHO05D001868 2.4e-11 73.6 286 29.7
MELO3C008695.2 Cucumis melo HOM05D001861 ORTHO05D001868 4.1e-11 72.8 274 31.4
CiPaw.03G268800 Carya illinoinensis HOM05D001861 ORTHO05D001868 5.4e-11 72.4 282 29.1
Aqoxy5G00168 Aquilegia oxysepala HOM05D001861 ORTHO05D001868 7.0e-11 72.0 284 30.3
FAN09G3342 Fragaria x ananassa HOM05D001861 ORTHO05D001868 7.0e-11 72.0 274 31.8
FAN14G2355 Fragaria x ananassa HOM05D001861 ORTHO05D001868 9.2e-11 71.6 274 31.8
Potri.013G047700 Populus trichocarpa HOM05D001861 ORTHO05D001868 1.2e-10 71.2 273 31.9
Gorai.007G274900 Gossypium raimondii HOM05D001861 ORTHO05D001868 1.6e-10 70.9 274 33.9
Potri.002G258501 Populus trichocarpa HOM05D001861 ORTHO05D001868 2.0e-10 70.5 289 29.8
Sabra13G0043700 Salix brachista HOM05D001861 ORTHO05D001868 2.7e-10 70.1 275 32.0
FvH4_6g01750 Fragaria vesca HOM05D001861 ORTHO05D001868 3.5e-10 69.7 272 31.6
Oeu014533.1 Olea europaea HOM05D001861 ORTHO05D001868 3.5e-10 69.7 165 35.8
PSO674G0045 Papaver somniferum HOM05D001861 ORTHO05D001868 3.5e-10 69.7 303 30.4
CSS0015268 Camellia sinensis var. sinensis HOM05D001861 ORTHO05D001868 6.0e-10 68.9 283 29.7
Gohir.D11G256600 Gossypium hirsutum HOM05D001861 ORTHO05D001868 6.0e-10 68.9 274 33.6
Gohir.A11G246400 Gossypium hirsutum HOM05D001861 ORTHO05D001868 7.8e-10 68.6 272 34.6
COL.COLO4_15500 Corchorus olitorius HOM05D001861 ORTHO05D001868 1.0e-09 68.2 260 32.3
PSO832G1062 Papaver somniferum HOM05D001861 ORTHO05D001868 1.0e-09 68.2 302 30.1
Peaxi162Scf00415g00518 Petunia axillaris HOM05D001861 ORTHO05D001868 1.0e-09 68.2 300 27.7
QL09p040988 Quercus lobata HOM05D001861 ORTHO05D001868 1.0e-09 68.2 269 30.5
Haze_24681 Corylus avellana HOM05D001861 ORTHO05D001868 1.3e-09 67.8 262 30.5
FAN05G0278 Fragaria x ananassa HOM05D001861 ORTHO05D001868 1.7e-09 67.4 279 30.8
MD12G1249400 Malus domestica HOM05D001861 ORTHO05D001868 1.7e-09 67.4 268 36.6
FAN14G5619 Fragaria x ananassa HOM05D001861 ORTHO05D001868 2.3e-09 67.0 272 31.2
Actinidia09524 Actinidia chinensis HOM05D001861 ORTHO05D001868 3.0e-09 66.6 282 29.1
Actinidia30135 Actinidia chinensis HOM05D001861 ORTHO05D001868 3.9e-09 66.2 244 29.9
Migut.D00464 Erythranthe guttata HOM05D001861 ORTHO05D001868 5.0e-09 65.9 285 28.8
FAN05G5582 Fragaria x ananassa HOM05D001861 ORTHO05D001868 5.0e-09 65.9 274 30.7
Gohir.D11G138700 Gossypium hirsutum HOM05D001861 ORTHO05D001868 5.0e-09 65.9 239 32.2
Nn3g19746 Nelumbo nucifera HOM05D001861 ORTHO05D001868 5.0e-09 65.9 243 32.1
Thecc.01G252900 Theobroma cacao HOM05D001861 ORTHO05D001868 5.0e-09 65.9 244 28.3
MD04G1231100 Malus domestica HOM05D001861 ORTHO05D001868 6.6e-09 65.5 257 31.5
VMungo1383G3726 Vigna mungo HOM05D001861 ORTHO05D001868 6.6e-09 65.5 240 31.7
Actinidia37543 Actinidia chinensis HOM05D001861 ORTHO05D001868 8.6e-09 65.1 253 29.6
Cc01_g17950 Coffea canephora HOM05D001861 ORTHO05D001868 8.6e-09 65.1 295 26.8
DCAR_018512 Daucus carota HOM05D001861 ORTHO05D001868 8.6e-09 65.1 273 30.8
Lj2A1144T90 Lonicera japonica HOM05D001861 ORTHO05D001868 1.1e-08 64.7 271 29.5
arahy.Tifrunner.gnm1.ann1.1WV257 Arachis hypogaea HOM05D001861 ORTHO05D001868 1.5e-08 64.3 174 36.8
Lsat_1_v5_gn_2_108221 Lactuca sativa HOM05D001861 ORTHO05D001868 1.5e-08 64.3 271 29.5
Lj5g0016435 Lotus japonicus HOM05D001861 ORTHO05D001868 1.5e-08 64.3 240 32.9
Sabra02G0196600 Salix brachista HOM05D001861 ORTHO05D001868 1.5e-08 64.3 264 30.3
Dinv34661 Davidia involucrata HOM05D001861 ORTHO05D001868 1.9e-08 63.9 114 39.5
CANSAT54G0422 Cannabis sativa HOM05D001861 ORTHO05D001868 2.5e-08 63.5 247 27.5
Lalb_Chr04g0262111 Lupinus albus HOM05D001861 ORTHO05D001868 2.5e-08 63.5 196 32.7
Glyma.03G250200 Glycine max HOM05D001861 ORTHO05D001868 3.3e-08 63.2 253 30.0
Eucgr.A01357 Eucalyptus grandis HOM05D001861 ORTHO05D001868 4.3e-08 62.8 268 28.7
Glyma.19G167200 Glycine max HOM05D001861 ORTHO05D001868 4.3e-08 62.8 251 31.5
SalBow4G2393 Salvia bowleyana HOM05D001861 ORTHO05D001868 4.3e-08 62.8 304 27.3
CiPaw.04G189000 Carya illinoinensis HOM05D001861 ORTHO05D001868 5.6e-08 62.4 279 27.2
Dinv06243 Davidia involucrata HOM05D001861 ORTHO05D001868 5.6e-08 62.4 108 46.3
Gohir.A11G132600 Gossypium hirsutum HOM05D001861 ORTHO05D001868 5.6e-08 62.4 279 30.8
Gorai.007G148800 Gossypium raimondii HOM05D001861 ORTHO05D001868 5.6e-08 62.4 276 30.4
Sed0002382 Sechium edule HOM05D001861 ORTHO05D001868 5.6e-08 62.4 272 30.5
Hma1.2p1_0273F.1_g109330 Hydrangea macrophylla HOM05D001861 ORTHO05D001868 7.3e-08 62.0 257 31.9
Cpa.g.sc306.5 Carica papaya HOM05D001861 ORTHO05D001868 9.5e-08 61.6 331 28.1
Lj1g0025782 Lotus japonicus HOM05D001861 ORTHO05D001868 9.5e-08 61.6 253 34.4
Phvul.006G104900 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 9.5e-08 61.6 273 30.0
Rhsim13G0039200 Rhododendron simsii HOM05D001861 ORTHO05D001868 9.5e-08 61.6 245 28.6
Ca_09656_v3 Cicer arietinum L. HOM05D001861 ORTHO05D001868 1.2e-07 61.2 278 30.2
Thhalv10007735m.g Eutrema salsugineum HOM05D001861 ORTHO05D001868 1.2e-07 61.2 261 31.0
GSVIVG01028395001 Vitis vinifera HOM05D001861 ORTHO05D001868 1.2e-07 61.2 260 27.7
Sed0015596 Sechium edule HOM05D001861 ORTHO05D001868 1.6e-07 60.8 293 27.6
arahy.Tifrunner.gnm1.ann1.M57DEN Arachis hypogaea HOM05D001861 ORTHO05D001868 2.1e-07 60.5 198 33.8
CANSAT01G1959 Cannabis sativa HOM05D001861 ORTHO05D001868 2.1e-07 60.5 265 26.8
Eucgr.H04224 Eucalyptus grandis HOM05D001861 ORTHO05D001868 2.1e-07 60.5 292 29.5
CAN.G1380.1 Capsicum annuum HOM05D001861 ORTHO05D001868 2.8e-07 60.1 266 27.8
Phvul.001G163600 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 2.8e-07 60.1 245 33.1
Ciclev10020148m.g Citrus clementina HOM05D001861 ORTHO05D001868 3.6e-07 59.7 280 27.5
Nitab4.5_0002389g0030 Nicotiana tabacum HOM05D001861 ORTHO05D001868 3.6e-07 59.7 291 29.2
Sp1g02870 Schrenkiella parvula HOM05D001861 ORTHO05D001868 3.6e-07 59.7 263 29.3
Atru.chr5.1809 Acer truncatum HOM05D001861 ORTHO05D001868 4.7e-07 59.3 274 30.7
CiPaw.07G073500 Carya illinoinensis HOM05D001861 ORTHO05D001868 4.7e-07 59.3 232 28.0
Glyma.13G125800 Glycine max HOM05D001861 ORTHO05D001099 4.7e-07 59.3 206 29.1
Prupe.8G218000 Prunus persica HOM05D001861 ORTHO05D001868 4.7e-07 59.3 271 27.7
PGSC0003DMG400024070 Solanum tuberosum HOM05D029188 ORTHO05D020309 4.7e-07 59.3 279 31.9
AUR62040915 Chenopodium quinoa HOM05D001861 ORTHO05D001868 6.2e-07 58.9 259 27.8
Phvul.007G190400 Phaseolus vulgaris HOM05D001861 ORTHO05D001868 6.2e-07 58.9 234 29.1
Ciclev10021910m.g Citrus clementina HOM05D001861 ORTHO05D001868 8.0e-07 58.5 171 34.5
Lj1C72T4 Lonicera japonica HOM05D001861 ORTHO05D001868 8.0e-07 58.5 264 26.9
Cpa.g.sc165.47 Carica papaya HOM05D001861 ORTHO05D001868 1.1e-06 58.2 214 31.3
Glyma.03G166000 Glycine max HOM05D001861 ORTHO05D001868 1.1e-06 58.2 274 31.0
Lj4C502G2 Lonicera japonica HOM05D001861 ORTHO05D001868 1.1e-06 58.2 65 53.8
THA.LOC104826049 Tarenaya hassleriana HOM05D001861 ORTHO05D001868 1.1e-06 58.2 264 29.9
CsaV3_3G028230 Cucumis sativus L. HOM05D001861 ORTHO05D001868 1.8e-06 57.4 265 29.4
Sc05g0003130 Simmondsia chinensis HOM05D001861 ORTHO05D001868 2.3e-06 57.0 276 28.3
PGSC0003DMG400003789 Solanum tuberosum HOM05D001861 ORTHO05D001868 2.3e-06 57.0 233 28.8
RcHm_v2.0_Chr6g0287181 Rosa chinensis HOM05D001861 ORTHO05D001868 6.8e-06 55.5 252 30.6
VMungo0540G1565 Vigna mungo HOM05D001861 ORTHO05D001868 6.8e-06 55.5 253 29.6
FAN20G2565 Fragaria x ananassa HOM05D001861 ORTHO05D001868 8.9e-06 55.1 275 28.4
VMungo0720G0376 Vigna mungo HOM05D001861 ORTHO05D001868 8.9e-06 55.1 249 29.7


User provided reference genes

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