Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.6e-193 677.2 437 100.0
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.6e-193 677.2 437 100.0
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 3.2e-163 578.9 436 85.1
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 7.1e-155 551.2 438 78.3
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.2e-154 550.4 452 78.5
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-150 537.3 437 77.1
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 6.9e-142 508.1 437 69.6
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 5.5e-139 498.4 437 69.6
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 3.2e-131 472.6 442 68.3
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 5.5e-131 471.9 435 72.0
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 9.4e-131 471.1 444 74.5
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.2e-130 470.7 457 64.1
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.3e-129 466.5 448 70.8
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 3.9e-129 465.7 448 70.8
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.5e-128 463.8 443 67.7
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 7.4e-128 461.5 443 72.9
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.7e-127 460.3 443 64.1
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 7.2e-123 444.9 442 66.5
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.0e-121 441.0 447 64.4
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.0e-121 441.0 448 64.3
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.8e-118 430.3 450 60.0
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.1e-118 429.5 449 65.7
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 5.3e-118 428.7 448 62.5
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.6e-117 426.4 449 66.4
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 4.5e-117 425.6 445 65.8
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 7.7e-117 424.9 438 65.5
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 6.5e-116 421.8 447 64.4
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 6.5e-116 421.8 443 63.9
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 3.2e-115 419.5 442 64.3
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 4.7e-114 415.6 446 60.8
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.0e-113 414.5 442 57.9
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 3.0e-113 412.9 449 64.1
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 5.2e-113 412.1 452 57.1
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 8.8e-113 411.4 450 63.6
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 3.3e-112 409.5 457 55.6
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 4.4e-112 409.1 448 57.6
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.4e-112 409.1 451 64.3
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 6.3e-111 405.2 462 54.1
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.1e-110 404.4 443 61.9
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.0e-109 400.2 454 60.1
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 8.5e-108 394.8 460 55.4
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 8.5e-108 394.8 460 55.4
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 7.5e-104 381.7 447 59.7
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 7.5e-104 381.7 458 56.3
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.8e-103 379.8 448 61.6
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 3.7e-103 379.4 448 58.0
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.4e-102 377.5 451 59.6
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 3.5e-101 372.9 446 55.4
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.7e-100 370.5 440 61.4
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.9e-100 369.8 441 58.5
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.9e-100 369.8 446 56.1
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 8.5e-100 368.2 440 61.1
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.2e-99 365.9 441 59.9
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 7.2e-99 365.2 449 62.1
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 9.4e-99 364.8 439 49.9
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.6e-98 362.8 406 59.4
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 2.3e-97 360.1 444 53.4
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.3e-95 354.4 428 59.8
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 8.3e-95 351.7 443 59.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.0e-92 342.4 428 59.8
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 2.5e-91 340.1 442 59.5
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.5e-88 330.9 427 45.0
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 2.6e-88 330.1 417 59.5
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 4.4e-88 329.3 444 55.4
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 2.2e-87 327.0 437 49.9
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 7.0e-86 322.0 457 52.5
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 4.6e-85 319.3 434 44.2
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.5e-83 314.3 446 58.7
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 5.4e-78 295.8 440 52.7
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 3.5e-77 293.1 378 56.6
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.3e-76 290.4 444 44.8
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 2.3e-76 290.4 437 42.1
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 6.6e-76 288.9 417 54.9
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 6.8e-73 278.9 344 68.0
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.9e-67 260.8 440 48.9
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 2.0e-64 250.8 232 57.3
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 3.6e-58 229.9 446 52.5
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 4.7e-58 229.6 133 78.9
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 4.7e-58 229.6 133 78.9
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.9e-54 217.6 462 51.3
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.2e-40 171.8 458 36.7
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.5e-40 171.4 147 54.4
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.6e-40 170.6 453 36.9
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.7e-39 167.9 145 56.6
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 2.9e-39 167.2 150 53.3
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 6.4e-39 166.0 167 50.3
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.1e-38 165.2 156 53.2
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.4e-38 164.9 120 61.7
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.2e-38 163.7 120 60.8
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.2e-38 163.7 120 60.8
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 3.2e-38 163.7 172 50.6
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.2e-38 163.7 174 48.9
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.2e-38 163.7 174 48.9
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.2e-38 163.3 150 51.3
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.2e-38 163.3 150 51.3
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 5.5e-38 162.9 120 60.8
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 5.5e-38 162.9 152 49.3
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 7.1e-38 162.5 261 42.9
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.2e-37 161.8 120 60.0
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.2e-37 161.8 168 50.0
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.6e-37 161.4 120 60.8
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.6e-37 161.4 123 59.3
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.6e-37 161.4 161 53.4
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.1e-37 161.0 120 60.0
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.1e-37 161.0 127 56.7
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 2.1e-37 161.0 268 39.9
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 2.7e-37 160.6 120 60.0
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.7e-37 160.6 120 60.0
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 2.7e-37 160.6 266 46.2
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 3.5e-37 160.2 169 49.7
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.5e-37 160.2 128 57.0
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 4.6e-37 159.8 157 51.6
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.6e-37 159.8 178 48.3
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 7.9e-37 159.1 120 59.2
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 7.9e-37 159.1 280 38.9
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 7.9e-37 159.1 146 56.2
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.0e-36 158.7 143 53.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.0e-36 158.7 288 37.2
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.0e-36 158.7 118 61.9
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.0e-36 158.7 259 43.6
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.3e-36 158.3 128 58.6
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.3e-36 158.3 258 45.0
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.3e-36 158.3 121 57.9
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.3e-36 158.3 144 51.4
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.8e-36 157.9 265 37.4
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.8e-36 157.9 154 47.4
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.3e-36 157.5 260 38.5
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.0e-36 157.1 258 39.1
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 3.0e-36 157.1 158 50.6
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.0e-36 157.1 121 57.9
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 3.0e-36 157.1 159 49.7
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.9e-36 156.8 151 51.7
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 3.9e-36 156.8 120 57.5
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 5.1e-36 156.4 120 59.2
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 6.7e-36 156.0 118 59.3
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 8.7e-36 155.6 260 41.5
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.1e-35 155.2 263 44.9
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.5e-35 154.8 148 53.4
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.5e-35 154.8 148 53.4
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.9e-35 154.5 260 37.7
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.9e-35 154.5 281 40.2
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.5e-35 154.1 263 38.0
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 3.3e-35 153.7 120 57.5
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-35 153.7 231 38.5
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 3.3e-35 153.7 231 38.5
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.3e-35 153.3 120 55.8
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.3e-35 153.3 120 55.8
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 5.6e-35 152.9 128 53.9
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.6e-34 151.4 139 51.1
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.6e-34 151.4 120 56.7
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.7e-34 150.2 143 49.0
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 8.1e-34 149.1 287 39.0
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.1e-33 148.7 121 53.7
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.4e-33 148.3 112 59.8
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.0e-31 142.1 155 46.5
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 1.0e-31 142.1 150 60.0
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 4.3e-27 126.7 78 75.6
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.3e-26 125.2 375 44.5
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.5e-08 65.1 53 58.5
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 6.5e-07 59.7 104 38.5
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 8.5e-07 59.3 80 47.5
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.4e-06 58.5 50 56.0


User provided reference genes

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