Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 0.0e+00 1083.6 555 100.0
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 7.3e-213 744.2 615 71.7
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.9e-160 570.1 550 60.5
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 1.6e-143 513.8 551 55.2
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 5.3e-139 498.8 550 53.5
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.7e-137 493.8 547 54.7
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 3.2e-120 436.4 544 47.6
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 5.4e-115 419.1 542 46.3
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 1.7e-113 414.1 549 44.6
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 2.5e-112 410.2 581 43.4
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 4.2e-112 409.5 548 46.9
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 9.5e-112 408.3 551 45.2
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 4.7e-111 406.0 551 44.1
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.8e-110 404.1 551 43.7
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 3.4e-109 399.8 543 45.1
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.2e-108 397.1 551 43.6
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 6.3e-108 395.6 542 44.3
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.3e-105 387.9 581 42.0
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 4.3e-104 382.9 509 44.4
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.6e-103 380.9 546 42.1
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 3.6e-103 379.8 549 42.6
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 4.7e-103 379.4 554 42.4
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.8e-102 377.5 540 42.0
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 7.5e-101 372.1 551 43.4
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 9.8e-101 371.7 541 43.3
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.2e-100 370.5 556 41.9
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 6.0e-98 362.5 604 40.2
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 6.6e-97 359.0 534 40.8
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.5e-96 357.8 544 41.7
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 1.9e-96 357.5 544 40.8
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 2.5e-96 357.1 539 41.2
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 4.3e-96 356.3 546 42.5
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 2.1e-95 354.0 576 43.1
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 2.8e-95 353.6 546 39.6
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 6.2e-95 352.4 550 41.1
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 4.0e-94 349.7 502 41.8
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 5.8e-93 345.9 539 39.0
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 2.9e-92 343.6 541 39.4
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 5.4e-91 339.3 535 41.1
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.7e-90 337.0 547 38.4
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 2.5e-88 330.5 547 38.0
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 7.3e-88 328.9 550 38.7
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 7.3e-88 328.9 550 38.7
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.2e-87 328.2 392 51.5
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.2e-87 328.2 491 40.7
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.2e-87 328.2 568 38.9
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.6e-87 327.8 568 38.9
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 2.1e-87 327.4 557 37.3
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 6.2e-87 325.9 534 38.8
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 1.1e-86 325.1 534 38.8
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.4e-86 324.7 543 38.1
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.8e-86 324.3 534 40.3
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.2e-85 321.6 539 39.9
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 2.6e-85 320.5 392 50.8
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 5.8e-85 319.3 554 37.2
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 2.2e-84 317.4 556 36.7
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 2.2e-84 317.4 493 40.0
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 2.9e-84 317.0 554 36.6
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 4.6e-82 309.7 554 36.8
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 4.6e-82 309.7 545 38.0
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 1.3e-81 308.1 546 37.2
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 3.9e-81 306.6 561 36.0
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 8.6e-81 305.4 557 37.2
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.9e-80 304.3 561 36.2
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 1.2e-79 301.6 546 36.8
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 3.8e-76 290.0 482 38.6
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 6.4e-76 289.3 506 36.6
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 9.2e-75 285.4 548 35.0
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.1e-74 284.3 510 35.5
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 3.9e-73 280.0 540 34.6
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 7.3e-72 275.8 543 35.0
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 6.2e-71 272.7 537 37.6
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.4e-70 271.6 245 60.0
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 1.5e-69 268.1 527 33.6
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 4.4e-69 266.5 514 37.2
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 2.9e-68 263.8 539 33.8
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.1e-67 261.9 499 37.7
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 1.4e-67 261.5 510 34.9
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.7e-66 257.3 317 47.0
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 6.0e-66 256.1 507 34.1
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 6.9e-62 242.7 507 33.7
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.5e-61 241.5 526 32.7
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 1.5e-61 241.5 535 31.2
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 3.4e-61 240.4 480 34.2
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 2.9e-60 237.3 543 31.7
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 8.4e-60 235.7 543 31.3
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 1.4e-59 235.0 532 31.8
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.3e-57 228.4 506 32.6
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 1.8e-57 228.0 265 48.7
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 6.7e-57 226.1 519 31.8
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.7e-55 220.3 236 52.5
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 4.5e-53 213.4 499 31.1
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 7.9e-50 202.6 508 34.3
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 3.0e-49 200.7 251 45.8
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 6.2e-47 193.0 535 29.0
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 4.0e-46 190.3 138 70.3
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.9e-46 189.5 256 44.1
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 4.2e-43 180.3 314 36.3
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 2.1e-42 177.9 314 36.6
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 6.0e-42 176.4 298 37.9
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.0e-41 175.6 313 36.4
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.8e-41 174.9 256 42.2
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 3.3e-40 170.6 507 27.4
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 2.2e-39 167.9 150 58.7
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 9.0e-38 162.5 132 60.6
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 2.2e-36 157.9 472 27.8
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 2.0e-32 144.8 374 28.1
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 6.3e-31 139.8 252 36.5
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 3.0e-25 120.9 85 75.3
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 7.4e-24 116.3 281 32.0
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 9.7e-24 115.9 118 50.8
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 1.3e-23 115.5 148 44.6
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 2.2e-23 114.8 171 45.0
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 1.9e-19 101.7 167 41.3
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.2e-18 99.0 545 24.2
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.5e-16 92.0 158 35.4
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 2.2e-15 88.2 107 47.7
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 2.2e-15 88.2 68 60.3
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 2.2e-15 88.2 68 60.3
RcHm_v2.0_Chr4g0419401 Rosa chinensis HOM05D006138 ORTHO05D007778 4.0e-09 67.4 102 39.2
CSS0037607 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 5.7e-08 63.5 52 67.3


User provided reference genes

Program Settings