Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0033600 Rhododendron simsii HOM05D010628 ORTHO05D010877 9.0e-245 849.7 408 100.0
Rhsim07G0232000 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.5e-228 794.3 395 95.4
RhsimUnG0035000 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.7e-166 589.7 336 85.1
Rhsim07G0232100 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.7e-145 518.8 357 72.3
RhsimUnG0033800 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.0e-144 515.4 360 72.2
RhsimUnG0034600 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.9e-142 508.4 352 71.9
RhsimUnG0034700 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.9e-142 508.4 352 71.9
RhsimUnG0034800 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.9e-142 508.4 352 71.9
RhsimUnG0034900 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.2e-140 503.8 352 71.3
RhsimUnG0034500 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.7e-140 502.7 352 71.0
RhsimUnG0034400 Rhododendron simsii HOM05D010628 ORTHO05D010877 5.2e-99 365.5 352 56.5
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.5e-45 188.0 357 37.5
Rhsim05G0082300 Rhododendron simsii HOM05D000130 ORTHO05D000257 5.6e-45 186.0 94 92.6
Rhsim09G0205400 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.2e-34 151.8 172 48.3
RhsimUnG0033700 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.9e-32 144.4 299 35.8
Dinv33461 Davidia involucrata HOM05D010628 ORTHO05D010877 1.1e-21 108.6 263 31.9
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 4.3e-21 106.7 308 29.5
Rhsim03G0011900 Rhododendron simsii HOM05D018081 ORTHO05D010877 5.7e-21 106.3 342 28.7
Rhsim12G0158900 Rhododendron simsii HOM05D000374 ORTHO05D000238 1.6e-20 104.8 275 31.6
Rhsim10G0137100 Rhododendron simsii HOM05D000374 ORTHO05D013046 1.2e-18 98.6 283 31.8
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 1.5e-18 98.2 275 29.8
CSS0008723 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 4.5e-18 96.7 364 28.8
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 7.6e-18 95.9 277 31.4
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 7.6e-18 95.9 277 31.4
CSS0046102 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 7.6e-18 95.9 201 32.8
CSS0019383 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 1.0e-17 95.5 335 27.5
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 2.2e-17 94.4 312 30.8
QL05p053761 Quercus lobata HOM05D010066 ORTHO05D016816 2.5e-16 90.9 273 28.2
CSS0012725 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 4.2e-16 90.1 332 30.1
Rhsim03G0039300 Rhododendron simsii HOM05D018081 ORTHO05D010877 7.1e-16 89.4 336 29.5
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 9.3e-16 89.0 312 26.9
CSS0029553 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 2.1e-15 87.8 255 30.6
Lj3P635T20 Lonicera japonica HOM05D053282 ORTHO05D010877 3.5e-15 87.0 255 27.8
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 6.1e-15 86.3 316 25.6
Thhalv10012107m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.7e-14 82.8 199 31.7
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 1.1e-13 82.0 190 32.1
Rhsim03G0231000 Rhododendron simsii HOM05D018081 ORTHO05D026100 1.5e-13 81.6 354 26.0
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 3.3e-13 80.5 134 35.8
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 5.7e-13 79.7 316 24.1
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 9.7e-13 79.0 275 26.5
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 1.6e-12 78.2 320 25.3
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.6e-12 78.2 300 25.3
Cfa003917 Carpinus fangiana HOM05D008391 ORTHO05D009743 4.8e-12 76.6 230 30.0
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 8.2e-12 75.9 220 30.5
BraA06t24494Z Brassica rapa HOM05D000249 ORTHO05D000206 1.8e-11 74.7 133 33.1
Carub.0002s2327 Capsella rubella HOM05D000249 ORTHO05D000206 4.1e-11 73.6 154 36.4
A06p13420 Brassica napus HOM05D000249 ORTHO05D000206 6.9e-11 72.8 135 31.1
Haze_15512 Corylus avellana HOM05D000163 ORTHO05D000962 6.9e-11 72.8 215 30.7
A06p43040 Brassica napus HOM05D000249 ORTHO05D000206 9.0e-11 72.4 133 32.3
Carub.0008s0881 Capsella rubella HOM05D000249 ORTHO05D000206 9.0e-11 72.4 174 31.0
Aqoxy2G00744 Aquilegia oxysepala HOM05D002402 ORTHO05D002633 1.2e-10 72.0 192 26.6
AT4G39590 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.2e-10 72.0 225 27.1
QL11p003115 Quercus lobata HOM05D010066 ORTHO05D009743 2.6e-10 70.9 229 26.6
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 3.4e-10 70.5 296 24.7
AL7G11720 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.5e-10 70.1 194 28.4
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 5.9e-10 69.7 230 27.4
Carub.0007s0183 Capsella rubella HOM05D000249 ORTHO05D000206 5.9e-10 69.7 156 30.1
QL11p050365 Quercus lobata HOM05D010066 ORTHO05D009743 5.9e-10 69.7 229 28.8
Gorai.010G041700 Gossypium raimondii HOM05D009781 ORTHO05D011819 7.7e-10 69.3 202 27.2
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 7.7e-10 69.3 295 25.1
Rhsim12G0051600 Rhododendron simsii HOM05D010628 ORTHO05D016249 1.7e-09 68.2 333 23.1
BcaNung05813 Brassica carinata HOM05D000249 ORTHO05D000206 2.2e-09 67.8 255 25.9
Thhalv10005584m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.2e-09 67.8 144 30.6
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 2.2e-09 67.8 162 28.4
CARHR175770 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.9e-09 67.4 158 30.4
QL11p045102 Quercus lobata HOM05D010066 ORTHO05D009743 2.9e-09 67.4 275 24.4
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 6.5e-09 66.2 126 36.5
AL7G12140 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 8.5e-09 65.9 159 30.2
AL7G11730 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.1e-08 65.5 152 31.6
Thhalv10005635m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.1e-08 65.5 113 34.5
QL11p055815 Quercus lobata HOM05D025344 ORTHO05D021181 1.4e-08 65.1 290 24.1
CARHR246950 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.9e-08 64.7 99 36.4
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 1.9e-08 64.7 177 31.6
Dinv35654 Davidia involucrata HOM05D013363 ORTHO05D015094 1.9e-08 64.7 300 24.3
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 1.9e-08 64.7 197 26.9
Carub.0008s0634 Capsella rubella HOM05D000249 ORTHO05D000206 2.5e-08 64.3 145 31.7
Ciclev10025908m.g Citrus clementina HOM05D000249 ORTHO05D000206 2.5e-08 64.3 113 34.5
BraA08t34282Z Brassica rapa HOM05D000249 ORTHO05D000206 3.2e-08 63.9 160 30.6
CARHR246590 Cardamine hirsuta HOM05D000249 ORTHO05D000206 4.2e-08 63.5 228 27.6
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 4.2e-08 63.5 197 26.9
A01p00440 Brassica napus HOM05D000249 ORTHO05D000206 5.5e-08 63.2 254 25.2
BraA01t00051Z Brassica rapa HOM05D000249 ORTHO05D000206 5.5e-08 63.2 254 25.2
COL.COLO4_31368 Corchorus olitorius HOM05D017380 ORTHO05D019049 5.5e-08 63.2 278 25.5
Duzib264G0588 Durio zibethinus HOM05D000249 ORTHO05D000206 5.5e-08 63.2 197 26.9
Sp6g05050 Schrenkiella parvula HOM05D000249 ORTHO05D016802 5.5e-08 63.2 157 32.5
AL34U10130 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 7.2e-08 62.8 128 32.8
AT4G19250 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 7.2e-08 62.8 135 30.4
Carub.0008s0622 Capsella rubella HOM05D000249 ORTHO05D000206 7.2e-08 62.8 128 35.9
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 7.2e-08 62.8 111 36.9
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 7.2e-08 62.8 161 28.6
AL1G52780 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.4e-08 62.4 196 28.6
AT4G19330 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 9.4e-08 62.4 135 30.4
A01p00990 Brassica napus HOM05D000249 ORTHO05D024028 1.6e-07 61.6 162 30.9
BraA01t00097Z Brassica rapa HOM05D000249 ORTHO05D024028 1.6e-07 61.6 162 30.9
DCAR_018731 Daucus carota HOM05D029922 ORTHO05D013046 2.1e-07 61.2 156 27.6
THA.LOC104807690 Tarenaya hassleriana HOM05D000249 ORTHO05D000206 2.1e-07 61.2 185 26.5
BcaB01g02478 Brassica carinata HOM05D000249 ORTHO05D000206 2.7e-07 60.8 156 30.1
BolC1t00971H Brassica oleracea HOM05D000249 ORTHO05D000206 2.7e-07 60.8 162 29.0
Carub.0004s1066 Capsella rubella HOM05D000249 ORTHO05D000206 2.7e-07 60.8 148 29.1
Carub.0007s3640 Capsella rubella HOM05D000249 ORTHO05D000206 2.7e-07 60.8 110 32.7
CARHR225340 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.7e-07 60.8 130 31.5
AUR62016279 Chenopodium quinoa HOM05D000249 ORTHO05D000206 2.7e-07 60.8 117 32.5
QL11p050103 Quercus lobata HOM05D010066 ORTHO05D009743 2.7e-07 60.8 120 31.7
A08p23270 Brassica napus HOM05D000249 ORTHO05D000206 3.6e-07 60.5 137 32.1
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 3.6e-07 60.5 197 25.9
C01p10140 Brassica napus HOM05D000249 ORTHO05D000206 4.6e-07 60.1 162 28.4
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 4.6e-07 60.1 158 25.9
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 4.6e-07 60.1 100 39.0
Sp7g31430 Schrenkiella parvula HOM05D000249 ORTHO05D000206 4.6e-07 60.1 123 36.6
QL11p050245 Quercus lobata HOM05D010066 ORTHO05D009743 6.1e-07 59.7 200 26.5
QL93p0284_0002 Quercus lobata HOM05D010066 ORTHO05D009743 6.1e-07 59.7 200 26.5
Thhalv10006011m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 7.9e-07 59.3 148 29.1
Carub.0007s3641 Capsella rubella HOM05D000249 ORTHO05D000206 1.0e-06 58.9 128 30.5
AL8G22350 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.4e-06 58.5 117 33.3
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 1.4e-06 58.5 115 32.2
QL11p042465 Quercus lobata HOM05D025344 ORTHO05D009743 1.4e-06 58.5 120 35.0
arahy.Tifrunner.gnm1.ann1.00W0BQ Arachis hypogaea HOM05D008504 ORTHO05D010707 1.8e-06 58.2 110 34.5
arahy.Tifrunner.gnm1.ann1.DST42P Arachis hypogaea HOM05D008504 ORTHO05D010707 1.8e-06 58.2 110 34.5
arahy.Tifrunner.gnm1.ann1.MCNZ84 Arachis hypogaea HOM05D008504 ORTHO05D010707 1.8e-06 58.2 110 34.5
BcaC09g51721 Brassica carinata HOM05D000249 ORTHO05D000206 1.8e-06 58.2 162 27.8
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 1.8e-06 58.2 176 30.1
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 1.8e-06 58.2 176 30.1
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 1.8e-06 58.2 176 30.1
CARHR139700 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.8e-06 58.2 113 32.7
QL11p036944 Quercus lobata HOM05D010066 ORTHO05D009743 1.8e-06 58.2 197 27.4
C03p37710 Brassica napus HOM05D000249 ORTHO05D000206 2.3e-06 57.8 149 28.9
BolC3t16060H Brassica oleracea HOM05D000249 ORTHO05D000206 2.3e-06 57.8 149 28.9
Thhalv10025580m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.0e-06 57.4 157 30.6
BolC4t26700H Brassica oleracea HOM05D000249 ORTHO05D000206 3.9e-06 57.0 117 30.8
Thhalv10009657m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.9e-06 57.0 199 28.1
QL11p036388 Quercus lobata HOM05D010066 ORTHO05D009743 3.9e-06 57.0 226 25.2
QL11p042411 Quercus lobata HOM05D025344 ORTHO05D009743 3.9e-06 57.0 139 33.8
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.9e-06 57.0 296 23.3
AL4G24610 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 5.1e-06 56.6 149 30.9
A06p48420 Brassica napus HOM05D000249 ORTHO05D000206 5.1e-06 56.6 152 28.3
BraA06t27710Z Brassica rapa HOM05D000249 ORTHO05D000206 5.1e-06 56.6 152 28.3
Carub.0007s0348 Capsella rubella HOM05D000249 ORTHO05D000206 5.1e-06 56.6 96 29.2
COL.COLO4_31615 Corchorus olitorius HOM05D052704 ORTHO05D044704 5.1e-06 56.6 107 30.8
HPP92_008505 Vanilla planifolia HOM05D000667 ORTHO05D009057 5.1e-06 56.6 190 27.4
A04p08940 Brassica napus HOM05D000249 ORTHO05D000206 6.7e-06 56.2 112 27.7
C07p01540 Brassica napus HOM05D000249 ORTHO05D000206 6.7e-06 56.2 99 31.3
BraA04t16590Z Brassica rapa HOM05D000249 ORTHO05D000206 6.7e-06 56.2 112 27.7
Carub.0011s0005 Capsella rubella HOM05D000249 ORTHO05D000206 6.7e-06 56.2 99 34.3
C04p51070 Brassica napus HOM05D000249 ORTHO05D000206 8.8e-06 55.8 117 29.9
Haze_25043 Corylus avellana HOM05D000249 ORTHO05D000206 8.8e-06 55.8 167 26.3
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 8.8e-06 55.8 106 33.0
Sp7g36900 Schrenkiella parvula HOM05D000249 ORTHO05D000206 8.8e-06 55.8 207 26.1


User provided reference genes

Program Settings