Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0026900 Rhododendron simsii HOM05D003636 ORTHO05D013299 1.2e-68 263.1 132 100.0
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 4.0e-53 211.5 122 87.7
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 2.1e-49 199.1 122 82.8
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 6.7e-40 167.5 122 70.5
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 4.3e-39 164.9 131 67.2
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 2.2e-38 162.5 122 69.7
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 2.2e-38 162.5 131 67.2
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.5e-36 156.4 128 66.4
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 3.4e-36 155.2 122 68.9
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 8.5e-35 150.6 122 64.8
RhsimUnG0006600 Rhododendron simsii HOM05D003636 ORTHO05D013299 7.2e-34 147.5 114 72.8
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 1.6e-33 146.4 136 57.4
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 1.6e-33 146.4 122 61.5
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 2.7e-33 145.6 122 64.8
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 6.1e-33 144.4 137 56.2
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 7.9e-33 144.1 128 65.6
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 7.9e-33 144.1 122 64.8
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.8e-32 142.9 128 65.6
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 2.3e-32 142.5 125 63.2
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 3.0e-32 142.1 122 62.3
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 8.7e-32 140.6 121 59.5
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 1.1e-31 140.2 122 59.8
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 1.5e-31 139.8 122 62.3
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 1.5e-31 139.8 122 62.3
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 2.5e-31 139.0 123 59.3
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 3.3e-31 138.7 122 60.7
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 3.3e-31 138.7 130 61.5
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 4.3e-31 138.3 122 61.5
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 5.7e-31 137.9 118 62.7
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 9.7e-31 137.1 118 61.0
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 1.7e-30 136.3 122 59.0
Rhsim03G0241700 Rhododendron simsii HOM05D003636 ORTHO05D013299 2.8e-30 135.6 90 82.2
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 6.3e-30 134.4 122 58.2
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 6.3e-30 134.4 122 60.7
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 6.3e-30 134.4 122 59.0
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 6.3e-30 134.4 122 56.6
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 8.2e-30 134.0 126 60.3
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.4e-29 133.3 122 57.4
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 2.4e-29 132.5 126 58.7
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 2.4e-29 132.5 122 56.6
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 3.1e-29 132.1 123 59.3
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 3.1e-29 132.1 119 62.2
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 3.1e-29 132.1 122 57.4
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 3.1e-29 132.1 121 58.7
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 4.1e-29 131.7 137 52.6
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 5.3e-29 131.3 137 53.3
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 6.9e-29 131.0 122 58.2
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 6.9e-29 131.0 123 56.9
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 9.1e-29 130.6 122 57.4
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 1.2e-28 130.2 122 57.4
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 2.0e-28 129.4 125 57.6
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 2.0e-28 129.4 122 55.7
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 3.4e-28 128.6 122 58.2
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 3.4e-28 128.6 133 54.1
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 4.5e-28 128.3 122 57.4
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 5.9e-28 127.9 121 59.5
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 5.9e-28 127.9 118 58.5
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 7.7e-28 127.5 122 58.2
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 7.7e-28 127.5 122 56.6
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 1.3e-27 126.7 127 57.5
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 1.7e-27 126.3 121 54.5
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 1.7e-27 126.3 122 57.4
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 3.8e-27 125.2 122 57.4
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 6.5e-27 124.4 122 55.7
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 6.5e-27 124.4 120 58.3
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 1.1e-26 123.6 122 56.6
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 1.1e-26 123.6 123 55.3
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 1.9e-26 122.9 122 57.4
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 2.5e-26 122.5 127 54.3
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 3.2e-26 122.1 125 55.2
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 3.2e-26 122.1 121 54.5
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 5.5e-26 121.3 124 53.2
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 7.2e-26 120.9 121 54.5
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 7.2e-26 120.9 122 55.7
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 2.7e-25 119.0 123 52.0
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 3.6e-25 118.6 127 53.5
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 3.6e-25 118.6 127 53.5
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 4.7e-25 118.2 121 59.5
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 4.7e-25 118.2 128 56.2
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.1e-25 117.9 128 57.8
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 7.9e-25 117.5 122 54.1
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 7.9e-25 117.5 123 51.2
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 7.9e-25 117.5 126 53.2
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 1.0e-24 117.1 120 55.0
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 3.9e-24 115.2 128 54.7
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 5.1e-24 114.8 122 53.3
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 5.1e-24 114.8 123 52.8
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 2.6e-23 112.5 122 50.8
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 3.3e-23 112.1 122 50.8
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 3.3e-23 112.1 122 50.8
Psat2g188720 Pisum sativum HOM05D003636 ORTHO05D005160 3.3e-23 112.1 128 51.6
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 5.7e-23 111.3 126 52.4
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 5.7e-23 111.3 126 52.4
TAR633G2776 Trochodendron aralioides HOM05D003636 ORTHO05D013299 5.7e-23 111.3 93 64.5
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 9.7e-23 110.5 122 50.8
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 1.7e-22 109.8 122 50.8
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 2.2e-22 109.4 123 49.6
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 3.7e-22 108.6 124 48.4
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 4.8e-22 108.2 122 51.6
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 6.3e-22 107.8 124 51.6
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 8.2e-22 107.5 124 51.6
AUR62025056 Chenopodium quinoa HOM05D003636 ORTHO05D013299 1.8e-21 106.3 95 60.0
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 1.8e-21 106.3 122 49.2
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 1.8e-21 106.3 124 50.8
AUR62031665 Chenopodium quinoa HOM05D003636 ORTHO05D013299 2.4e-21 105.9 86 64.0
AUR62032924 Chenopodium quinoa HOM05D003636 ORTHO05D013299 5.3e-21 104.8 103 54.4
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 9.1e-21 104.0 122 48.4
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 4.5e-20 101.7 126 49.2
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 7.7e-20 100.9 127 48.8
RhsimUnG0174100 Rhododendron simsii HOM05D003636 ORTHO05D013299 1.3e-19 100.1 57 89.5
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 6.5e-19 97.8 97 57.7
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 2.5e-18 95.9 124 47.6
HPP92_018389 Vanilla planifolia HOM05D003636 ORTHO05D013299 7.2e-18 94.4 111 50.5
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 1.2e-17 93.6 125 48.8
unitig_736.g22445 Utricularia gibba HOM05D003636 ORTHO05D013299 4.7e-17 91.7 87 57.5
ATR0691G029 Amborella trichopoda HOM05D003636 ORTHO05D026550 1.0e-16 90.5 85 61.2
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 2.3e-16 89.4 81 58.0
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 3.9e-16 88.6 126 46.8
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 6.7e-16 87.8 123 43.9
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 1.5e-15 86.7 124 44.4
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 3.3e-15 85.5 122 43.4
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 4.8e-14 81.6 121 41.3
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 1.8e-13 79.7 117 43.6
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.6e-12 76.6 126 43.7
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 1.7e-11 73.2 73 52.1
VMungo0331G1464 Vigna mungo HOM05D003636 ORTHO05D013299 3.2e-10 68.9 72 54.2
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 8.8e-08 60.8 97 40.2
MELO3C029178.2 Cucumis melo HOM05D003636 ORTHO05D005160 8.2e-06 54.3 75 42.7
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 8.2e-06 54.3 60 45.0


User provided reference genes

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