Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 2.2e-200 702.2 379 100.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 1.1e-146 523.9 379 77.0
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.9e-143 513.1 386 74.9
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.6e-139 500.0 386 72.0
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.1e-139 499.6 378 74.9
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.3e-136 490.3 371 74.1
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.9e-136 489.2 383 73.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.4e-135 486.1 367 74.4
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.2e-135 485.7 374 73.0
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 4.6e-134 481.9 380 69.7
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 4.6e-134 481.9 378 73.3
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.7e-133 479.9 361 74.0
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 5.1e-133 478.4 384 71.1
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 6.6e-133 478.0 374 72.7
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 8.7e-133 477.6 377 72.9
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.1e-132 477.2 377 71.6
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.1e-132 477.2 373 71.3
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-132 476.9 337 77.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.5e-132 476.9 378 72.8
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.3e-131 473.8 378 71.4
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.6e-131 473.4 377 70.8
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 2.1e-131 473.0 371 72.0
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 6.2e-131 471.5 377 70.0
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 8.1e-131 471.1 349 73.6
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 9.0e-130 467.6 334 75.4
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 9.0e-130 467.6 340 73.8
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-129 467.2 377 69.5
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 7.6e-129 464.5 351 72.6
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.9e-129 464.2 376 69.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 9.9e-129 464.2 331 74.6
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.3e-128 463.8 377 70.3
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.7e-128 463.4 377 70.0
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.2e-128 463.0 347 72.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.9e-128 462.6 377 67.6
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.8e-128 462.2 380 68.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.8e-128 462.2 380 68.7
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 4.9e-128 461.8 347 72.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 6.4e-128 461.5 362 70.7
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 8.4e-128 461.1 367 70.6
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 8.4e-128 461.1 366 70.5
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 8.4e-128 461.1 380 68.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.4e-127 460.3 361 70.6
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.4e-127 460.3 361 70.6
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.9e-127 459.9 347 72.9
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.4e-127 459.5 323 75.9
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 3.2e-127 459.1 365 70.1
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.2e-127 459.1 376 67.3
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 3.2e-127 459.1 380 69.7
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 4.2e-127 458.8 377 67.6
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 9.3e-127 457.6 376 70.5
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.2e-126 457.2 377 69.0
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.6e-126 456.8 329 74.5
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.1e-126 456.4 377 67.6
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.1e-126 456.4 363 71.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 2.7e-126 456.1 377 67.6
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 7.9e-126 454.5 371 69.3
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.3e-125 453.8 382 67.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-125 453.8 376 67.8
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.3e-125 453.8 377 66.6
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.8e-125 453.4 371 69.0
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.8e-125 453.4 348 72.7
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.8e-125 453.4 370 68.9
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.8e-125 453.4 370 69.2
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.8e-125 453.4 330 74.8
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 2.3e-125 453.0 371 68.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.0e-125 452.6 371 69.0
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 3.0e-125 452.6 371 68.5
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 3.0e-125 452.6 371 68.5
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 3.0e-125 452.6 371 68.7
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 3.0e-125 452.6 357 68.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 3.9e-125 452.2 371 68.5
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 3.9e-125 452.2 371 68.5
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 5.1e-125 451.8 371 68.5
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 6.7e-125 451.4 379 67.8
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 8.7e-125 451.1 371 69.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 8.7e-125 451.1 379 68.1
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.1e-124 450.7 348 72.7
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-124 450.3 361 70.1
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.5e-124 450.3 379 62.3
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-124 450.3 354 71.5
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-124 450.3 373 68.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.5e-124 449.5 365 69.6
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 7.4e-124 448.0 363 69.7
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 9.6e-124 447.6 357 69.7
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-123 446.8 377 67.6
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-123 446.8 377 67.6
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.1e-123 446.4 357 68.6
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.8e-123 446.0 365 68.8
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.8e-123 446.0 365 69.0
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.7e-123 445.7 381 67.7
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.8e-123 445.3 362 68.8
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 6.2e-123 444.9 356 70.2
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 8.1e-123 444.5 375 65.1
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.1e-122 444.1 364 67.9
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.8e-122 443.4 371 67.7
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 2.4e-122 443.0 350 70.6
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.1e-122 442.6 348 70.7
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 5.3e-122 441.8 330 71.8
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 5.3e-122 441.8 371 67.4
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.2e-121 440.7 375 66.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.5e-121 440.3 375 64.5
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.0e-121 439.9 371 67.1
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.3e-120 437.2 363 69.4
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.9e-120 435.3 330 71.5
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 8.4e-120 434.5 355 69.9
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.4e-119 433.7 328 72.0
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 4.2e-119 432.2 324 73.1
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.6e-118 430.3 365 66.6
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.3e-116 422.5 349 65.9
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.4e-114 417.2 306 72.2
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.4e-114 416.4 327 68.8
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 5.3e-114 415.2 306 71.6
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 9.0e-114 414.5 306 71.6
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.6e-113 412.9 350 66.0
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 2.2e-112 409.8 376 63.8
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.3e-108 395.6 381 58.5
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 2.2e-104 383.3 375 61.9
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-101 374.0 318 67.6
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 5.3e-98 362.1 245 80.4
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.4e-97 359.4 334 59.6
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 5.0e-96 355.5 372 56.5
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.4e-93 347.4 355 55.8
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-93 347.1 299 66.6
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 4.4e-92 342.4 376 57.4
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.8e-91 339.7 243 77.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.2e-86 324.3 249 72.3
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.0e-85 321.2 204 77.5
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.8e-85 320.5 297 55.2
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.1e-84 317.8 357 54.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 3.3e-84 316.2 343 53.6
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 5.3e-82 308.9 322 55.0
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.9e-79 300.4 326 58.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.4e-77 294.3 355 52.7
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.2e-71 272.7 325 52.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-64 250.4 235 56.2
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.2e-60 238.0 209 61.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 4.9e-51 206.1 129 80.6
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.0e-48 198.4 208 52.9
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.7e-40 171.0 165 53.9
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 2.9e-35 153.7 160 56.2
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 4.9e-35 152.9 164 54.9
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.1e-29 135.2 90 68.9
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.4e-29 134.8 103 67.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 4.2e-26 123.2 135 53.3
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 9.2e-26 122.1 128 54.7
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 7.8e-25 119.0 92 64.1
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 8.7e-24 115.5 78 73.1
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 7.6e-20 102.4 130 46.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 7.6e-20 102.4 294 29.9
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 4.9e-19 99.8 64 73.4
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 2.4e-18 97.4 91 52.7
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.2e-17 95.1 125 46.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-16 90.9 111 46.8
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 5.1e-16 89.7 60 70.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 8.1e-14 82.4 186 35.5
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.2e-12 78.6 322 28.6
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 5.8e-12 76.3 57 64.9
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.2e-11 74.3 178 35.4
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 4.2e-10 70.1 63 58.7
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.6e-09 66.6 50 62.0
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.0e-09 66.2 46 71.7
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.0e-08 63.9 52 63.5
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.7e-08 62.4 43 67.4
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.9e-07 61.2 72 72.2
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.9e-07 61.2 66 48.5
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.5e-07 60.8 61 55.7
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 5.6e-07 59.7 70 45.7
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.4e-07 59.3 52 61.5
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 9.6e-07 58.9 49 57.1
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-06 58.5 43 62.8
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.2e-06 56.2 52 55.8


User provided reference genes

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