Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 3.0e-137 491.9 254 100.0
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 6.5e-108 394.4 321 71.3
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 1.6e-103 379.8 254 79.5
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 3.9e-97 358.6 254 75.2
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 3.0e-89 332.4 254 71.3
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 5.1e-89 331.6 254 71.7
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 1.1e-88 330.5 254 68.9
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 5.7e-88 328.2 254 68.1
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 1.7e-87 326.6 254 67.3
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.7e-87 326.6 254 67.3
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.8e-87 325.9 254 68.9
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 8.2e-87 324.3 254 67.3
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.1e-86 323.9 254 67.7
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 1.2e-85 320.5 254 67.7
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 1.2e-85 320.5 254 67.7
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.6e-85 320.1 254 65.0
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.0e-85 319.7 254 66.9
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.5e-85 318.9 254 66.1
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 4.5e-85 318.5 254 66.5
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 4.5e-85 318.5 254 67.3
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.7e-84 316.6 254 65.0
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 2.9e-84 315.8 263 63.5
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 6.5e-84 314.7 254 65.4
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 6.5e-84 314.7 254 66.1
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 8.5e-84 314.3 254 65.7
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 1.1e-83 313.9 254 64.6
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.5e-83 313.5 254 65.7
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.9e-83 313.2 254 65.0
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 3.2e-83 312.4 254 65.7
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 5.5e-83 311.6 254 65.7
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 7.2e-83 311.2 256 66.0
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.2e-82 310.5 253 66.8
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 2.7e-82 309.3 254 65.7
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 8.0e-82 307.8 254 65.7
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.4e-81 307.0 254 64.6
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.4e-81 307.0 254 64.6
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.8e-81 306.6 254 66.1
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.3e-81 306.2 254 64.2
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 4.0e-81 305.4 254 63.4
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 6.7e-81 304.7 254 64.2
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 6.7e-81 304.7 254 64.2
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 8.8e-81 304.3 254 63.0
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.1e-80 303.9 255 62.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.5e-80 303.5 254 63.4
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 2.0e-80 303.1 254 63.8
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.0e-80 303.1 254 63.4
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 2.6e-80 302.8 254 62.6
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 2.6e-80 302.8 254 64.2
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.6e-80 302.8 254 64.2
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 3.3e-80 302.4 254 62.6
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 5.7e-80 301.6 254 63.8
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 1.3e-79 300.4 254 62.6
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.7e-79 300.1 274 61.7
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 2.8e-79 299.3 254 62.6
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 4.8e-79 298.5 254 61.4
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 6.3e-79 298.1 254 62.2
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 6.3e-79 298.1 254 63.4
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 8.2e-79 297.7 255 63.1
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 2.4e-78 296.2 256 62.5
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 5.3e-78 295.0 256 62.1
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 7.0e-78 294.7 254 64.6
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 7.0e-78 294.7 254 63.0
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.2e-77 293.9 254 61.0
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.0e-77 293.1 254 62.2
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 3.5e-77 292.4 254 61.8
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 3.5e-77 292.4 256 61.7
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.9e-77 291.6 276 59.4
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 7.7e-77 291.2 254 60.2
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.7e-76 290.0 244 62.7
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.7e-76 290.0 257 63.8
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 3.8e-76 288.9 254 61.0
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 3.8e-76 288.9 307 56.0
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 3.8e-76 288.9 254 63.0
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.9e-75 286.6 254 60.6
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 3.2e-75 285.8 256 60.9
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.2e-75 285.8 254 59.8
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 3.2e-75 285.8 254 59.8
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 4.2e-75 285.4 254 59.8
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 4.2e-75 285.4 244 61.5
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 5.5e-75 285.0 255 62.0
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 7.2e-75 284.6 254 59.8
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 9.4e-75 284.3 254 59.4
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.2e-74 283.9 254 59.1
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 2.1e-74 283.1 254 59.4
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 2.7e-74 282.7 255 62.7
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 2.7e-74 282.7 254 59.1
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.6e-74 282.3 254 61.4
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 3.6e-74 282.3 254 60.6
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 3.6e-74 282.3 254 60.2
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.6e-74 282.3 254 59.1
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 3.6e-74 282.3 254 59.1
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 4.7e-74 282.0 254 58.7
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 4.7e-74 282.0 360 49.2
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 6.1e-74 281.6 254 60.2
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 8.0e-74 281.2 254 59.1
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 6.8e-73 278.1 254 58.7
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 8.8e-73 277.7 254 60.2
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 3.4e-72 275.8 264 59.5
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.4e-72 275.8 254 59.1
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 7.5e-72 274.6 254 57.5
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 1.7e-71 273.5 254 57.5
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 9.1e-70 267.7 254 56.7
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 9.1e-70 267.7 254 57.9
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 2.0e-69 266.5 254 55.5
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 3.0e-65 252.7 244 56.6
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 5.7e-64 248.4 237 56.1
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 1.7e-63 246.9 223 58.7
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.8e-62 243.4 204 64.2
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.6e-60 235.0 254 52.8
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.2e-56 224.2 254 47.2
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 1.7e-55 220.3 165 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 1.1e-54 217.6 254 49.6
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.4e-54 216.5 203 58.1
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.5e-51 207.2 254 48.0
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 3.3e-51 206.1 138 75.4
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.2e-50 204.1 141 73.8
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 4.7e-50 202.2 188 58.5
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 6.2e-50 201.8 188 59.0
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.5e-48 194.9 188 58.0
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.7e-47 192.6 254 47.6
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 8.3e-47 191.4 138 67.4
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 8.3e-47 191.4 117 82.1
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 5.4e-46 188.7 283 44.9
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.0e-45 186.8 173 59.5
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 5.6e-43 178.7 111 79.3
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 9.5e-43 177.9 263 40.7
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 4.1e-38 162.5 176 50.0
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 1.2e-37 161.0 266 41.4
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 2.7e-37 159.8 265 43.8
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.3e-36 157.5 265 40.8
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 1.2e-34 151.0 163 52.8
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.1e-33 147.9 154 50.6
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.4e-33 147.5 163 50.3
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 4.9e-31 139.0 242 39.7
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 8.4e-31 138.3 142 54.9
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 9.2e-30 134.8 298 34.9
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.9e-27 127.1 99 63.6
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 5.6e-27 125.6 115 61.7
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 8.4e-23 111.7 118 53.4
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 8.4e-23 111.7 111 52.3
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.9e-22 110.5 70 74.3
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.1e-17 94.7 70 68.6
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 6.9e-17 92.0 63 63.5
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.5e-16 90.9 66 65.2
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 2.0e-16 90.5 71 56.3
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.5e-16 89.4 79 63.3
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.4e-14 84.3 131 42.0
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.9e-14 84.0 54 77.8
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.4e-14 83.6 148 39.2
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 7.9e-13 78.6 117 42.7
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.9e-11 73.9 58 62.1
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 3.3e-11 73.2 61 59.0
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 5.6e-11 72.4 92 42.4
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.5e-08 62.8 37 73.0
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 5.8e-08 62.4 41 70.7
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.7e-07 60.8 93 40.9
Gohir.A12G148851 Gossypium hirsutum HOM05D004531 ORTHO05D005484 5.5e-06 55.8 62 54.8


User provided reference genes

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