Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 5.1e-37 157.1 75 100.0
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 5.1e-37 157.1 75 100.0
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 4.0e-13 77.8 63 66.7
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 7.5e-12 73.6 68 57.4
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 8.3e-11 70.1 64 60.9
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 8.3e-11 70.1 62 61.3
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 2.4e-10 68.6 64 59.4
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 4.1e-10 67.8 69 53.6
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 4.1e-10 67.8 64 56.2
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 5.3e-10 67.4 64 57.8
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 5.3e-10 67.4 64 57.8
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 5.3e-10 67.4 64 57.8
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 5.3e-10 67.4 69 55.1
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 7.0e-10 67.0 64 56.2
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-09 66.2 64 56.2
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-09 66.2 64 56.2
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 2.0e-09 65.5 64 56.2
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.7e-09 65.1 63 57.1
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 53.1
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 54.7
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 4.5e-09 64.3 64 56.2
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 7.7e-09 63.5 64 54.7
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 7.7e-09 63.5 64 54.7
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 7.7e-09 63.5 64 54.7
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 7.7e-09 63.5 64 54.7
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 1.3e-08 62.8 70 48.6
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-08 62.8 64 54.7
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-08 62.8 64 54.7
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 1.3e-08 62.8 71 50.7
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 1.3e-08 62.8 64 51.6
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 1.3e-08 62.8 71 50.7
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.7e-08 62.4 64 53.1
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.7e-08 62.4 64 53.1
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.7e-08 62.4 64 53.1
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 2.2e-08 62.0 71 50.7
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 2.2e-08 62.0 62 53.2
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 2.9e-08 61.6 64 51.6
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 2.9e-08 61.6 64 51.6
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 2.9e-08 61.6 64 51.6
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 2.9e-08 61.6 64 51.6
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 2.9e-08 61.6 64 51.6
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 3.8e-08 61.2 62 53.2
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.8e-08 61.2 65 50.8
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 3.8e-08 61.2 63 52.4
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 5.0e-08 60.8 71 49.3
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 5.0e-08 60.8 64 50.0
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 5.0e-08 60.8 64 50.0
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 5.0e-08 60.8 64 50.0
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 5.0e-08 60.8 64 51.6
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 6.5e-08 60.5 64 50.0
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 6.5e-08 60.5 64 50.0
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 6.5e-08 60.5 62 51.6
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 6.5e-08 60.5 64 50.0
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 8.5e-08 60.1 64 50.0
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 8.5e-08 60.1 64 53.1
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 8.5e-08 60.1 64 51.6
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-07 59.7 64 51.6
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 1.1e-07 59.7 64 50.0
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 1.1e-07 59.7 58 55.2
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 1.1e-07 59.7 64 51.6
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 1.1e-07 59.7 63 52.4
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.5e-07 59.3 64 50.0
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.9e-07 58.9 63 54.0
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.9e-07 58.9 65 47.7
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 2.5e-07 58.5 64 46.9
unitig_749.g14119 Utricularia gibba HOM05D007316 ORTHO05D009393 2.5e-07 58.5 76 43.4
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 4.2e-07 57.8 64 51.6
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 4.2e-07 57.8 64 48.4
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 4.2e-07 57.8 64 48.4
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 4.2e-07 57.8 64 48.4
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 5.5e-07 57.4 62 51.6
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 5.5e-07 57.4 62 51.6
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 5.5e-07 57.4 62 50.0
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 5.5e-07 57.4 35 77.1
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.6e-06 55.8 30 80.0
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 2.1e-06 55.5 62 46.8
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 2.1e-06 55.5 61 49.2
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 2.7e-06 55.1 64 46.9
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 3.6e-06 54.7 68 50.0
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 3.6e-06 54.7 66 48.5
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 4.7e-06 54.3 66 48.5
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 6.1e-06 53.9 65 47.7


User provided reference genes

Program Settings