Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.4e-234 813.1 408 100.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.7e-233 810.8 408 99.8
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.8e-205 719.2 408 86.5
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 2.5e-202 708.8 409 83.1
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 3.7e-190 668.3 408 79.9
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.6e-188 662.9 408 78.4
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 4.6e-188 661.4 408 78.2
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.0e-187 660.2 408 78.2
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 5.0e-187 657.9 408 77.7
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 1.5e-186 656.4 358 89.4
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 7.3e-186 654.1 408 77.9
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 2.8e-185 652.1 408 76.7
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 4.7e-185 651.4 411 76.2
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 4.7e-185 651.4 408 77.5
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.8e-184 649.4 405 76.3
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 5.2e-184 647.9 408 79.2
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 6.8e-184 647.5 407 77.4
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 6.8e-184 647.5 407 77.4
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 2.6e-183 645.6 408 75.5
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.4e-183 644.8 408 76.5
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 4.4e-183 644.8 407 76.4
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.3e-182 643.3 410 76.1
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.7e-182 642.9 408 76.0
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 2.2e-182 642.5 408 77.0
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.9e-182 642.1 408 76.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.9e-181 639.4 408 75.7
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 4.1e-181 638.3 408 75.2
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 5.4e-181 637.9 408 75.0
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 3.5e-180 635.2 405 75.3
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 4.6e-180 634.8 408 75.0
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 6.0e-180 634.4 409 76.0
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 2.3e-179 632.5 405 76.5
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.3e-179 632.5 408 75.7
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.0e-179 632.1 408 75.2
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.0e-179 632.1 408 75.2
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 8.6e-179 630.6 408 74.3
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.5e-178 629.8 409 75.1
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.9e-178 629.4 408 76.2
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 2.5e-178 629.0 401 75.6
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 2.5e-178 629.0 401 75.6
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.3e-178 627.5 402 77.1
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 9.5e-178 627.1 439 73.1
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 2.8e-177 625.5 408 73.8
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 1.1e-176 623.6 408 74.0
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.1e-176 623.6 408 72.5
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.3e-176 622.5 408 74.8
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 2.3e-176 622.5 402 74.4
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 4.0e-176 621.7 405 73.3
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 8.9e-176 620.5 408 72.3
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.6e-175 619.0 408 72.8
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 3.4e-175 618.6 408 74.0
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.4e-175 618.2 402 73.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 4.4e-175 618.2 402 73.9
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.7e-174 616.3 408 73.0
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.2e-174 615.9 408 73.0
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 2.9e-174 615.5 408 73.3
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 72.5
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 4.9e-174 614.8 427 71.4
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 4.9e-174 614.8 408 73.8
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.1e-173 613.6 408 73.5
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.4e-173 613.2 408 75.0
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.9e-173 612.8 398 74.6
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.4e-173 612.5 398 74.4
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 3.2e-173 612.1 406 74.1
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 5.4e-173 611.3 405 73.6
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.1e-172 609.4 401 74.1
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 2.7e-172 609.0 408 72.3
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.5e-172 608.6 402 72.9
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.6e-172 608.2 400 74.0
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.3e-171 606.7 406 74.6
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.7e-171 606.3 409 71.4
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 3.0e-171 605.5 402 72.4
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 3.0e-171 605.5 402 72.4
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 3.0e-171 605.5 408 71.8
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 3.9e-171 605.1 406 73.6
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.9e-170 602.8 402 72.9
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 7.3e-170 600.9 408 72.3
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 4.7e-169 598.2 402 72.9
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.4e-168 596.7 402 71.9
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 3.1e-168 595.5 408 72.1
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 5.2e-168 594.7 406 73.6
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 5.2e-168 594.7 402 72.6
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 9.9e-167 590.5 494 63.2
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 3.8e-166 588.6 402 71.1
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 8.4e-166 587.4 406 70.7
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 3.2e-165 585.5 406 70.2
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 7.1e-165 584.3 398 72.4
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 4.6e-164 581.6 403 69.5
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 6.0e-164 581.3 406 69.7
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 6.0e-164 581.3 408 70.6
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 7.8e-164 580.9 406 69.7
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.7e-163 579.7 405 70.1
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.7e-163 579.7 409 69.4
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.7e-163 579.7 403 70.0
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.3e-163 579.3 403 69.5
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 2.3e-163 579.3 405 70.1
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 8.7e-163 577.4 403 70.2
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 1.1e-162 577.0 406 69.2
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 1.1e-162 577.0 406 69.2
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 1.1e-162 577.0 406 69.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.5e-162 576.6 402 70.1
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 8.1e-161 570.9 406 69.2
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 8.1e-161 570.9 402 69.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.8e-160 569.7 353 77.6
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.4e-160 569.3 400 70.8
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 9.9e-159 563.9 402 70.1
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 9.9e-159 563.9 406 67.2
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.7e-158 563.1 402 69.9
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 3.8e-158 562.0 407 68.6
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.9e-157 559.7 402 68.7
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 3.0e-155 552.4 402 66.9
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.8e-153 545.8 408 66.4
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 6.9e-152 541.2 405 65.7
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 2.0e-151 539.7 405 65.9
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 1.1e-149 533.9 375 70.9
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 7.1e-149 531.2 409 64.3
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 6.0e-148 528.1 313 81.8
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.6e-143 512.7 407 60.4
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 4.9e-142 508.4 403 62.3
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.8e-139 500.0 405 61.5
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 7.4e-130 468.0 402 60.4
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 9.7e-130 467.6 416 57.9
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.6e-127 459.5 315 72.1
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 7.9e-116 421.4 363 59.0
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 4.8e-113 412.1 264 78.0
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 3.1e-112 409.5 267 73.8
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.7e-110 403.7 412 58.7
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 4.2e-109 399.1 313 61.7
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 2.6e-106 389.8 273 68.9
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.0e-102 377.9 428 47.0
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 6.5e-102 375.2 411 49.6
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 2.4e-96 356.7 421 46.6
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 9.8e-90 334.7 410 46.6
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 6.1e-84 315.5 253 65.2
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 4.5e-79 299.3 443 40.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.2e-74 284.6 161 86.3
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 1.3e-73 281.2 173 80.3
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 3.7e-73 279.6 176 76.7
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 2.7e-71 273.5 176 75.6
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.3e-62 243.8 213 57.3
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 6.8e-59 232.3 158 68.4
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.7e-55 220.3 194 58.2
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 3.9e-54 216.5 135 77.0
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 1.8e-51 207.6 344 36.0
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.8e-51 207.6 151 66.9
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 4.9e-49 199.5 112 83.0
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 3.5e-39 166.8 93 87.1
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 4.2e-32 143.3 97 70.1
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.6e-31 141.4 97 77.3
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 4.1e-19 100.1 227 29.5
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 5.0e-17 93.2 84 59.5
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 3.2e-16 90.5 70 62.9
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.0e-14 85.5 57 73.7
CSS0025313 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D113579 8.8e-06 55.8 38 73.7


User provided reference genes

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